Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | WEB84_RS11420 | Genome accession | NZ_CP147783 |
| Coordinates | 2121370..2122149 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain Sterne-CLR2-13 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2082548..2156471 | 2121370..2122149 | within | 0 |
Gene organization within MGE regions
Location: 2082548..2156471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WEB84_RS11230 (WEB84_11225) | rsmB | 2082706..2084040 (+) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| WEB84_RS11235 (WEB84_11230) | rlmN | 2084045..2085133 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| WEB84_RS11240 (WEB84_11235) | - | 2085138..2085890 (+) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| WEB84_RS11245 (WEB84_11240) | prkC | 2085899..2087872 (+) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| WEB84_RS11250 (WEB84_11245) | rsgA | 2088141..2089022 (+) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| WEB84_RS11255 (WEB84_11250) | rpe | 2089025..2089669 (+) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| WEB84_RS11260 (WEB84_11255) | - | 2089769..2090449 (+) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| WEB84_RS11265 (WEB84_11260) | spoVM | 2090516..2090596 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| WEB84_RS11270 (WEB84_11265) | rpmB | 2090669..2090857 (-) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| WEB84_RS11275 (WEB84_11270) | - | 2091236..2091598 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| WEB84_RS11280 (WEB84_11275) | - | 2091621..2093297 (+) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| WEB84_RS11285 (WEB84_11280) | recG | 2093587..2095635 (+) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| WEB84_RS11290 (WEB84_11285) | fapR | 2095724..2096317 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| WEB84_RS11295 (WEB84_11290) | plsX | 2096314..2097306 (+) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| WEB84_RS11300 (WEB84_11295) | fabD | 2097321..2098265 (+) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| WEB84_RS11305 (WEB84_11300) | fabG | 2098265..2099005 (+) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| WEB84_RS11310 (WEB84_11305) | acpP | 2099075..2099308 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| WEB84_RS11315 (WEB84_11310) | rncS | 2099367..2100104 (+) | 738 | WP_001146873.1 | ribonuclease III | - |
| WEB84_RS11320 (WEB84_11315) | smc | 2100251..2103820 (+) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| WEB84_RS11325 (WEB84_11320) | ftsY | 2103836..2104825 (+) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| WEB84_RS11330 (WEB84_11325) | - | 2104958..2105290 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| WEB84_RS11335 (WEB84_11330) | ffh | 2105303..2106652 (+) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| WEB84_RS11340 (WEB84_11335) | rpsP | 2106753..2107025 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| WEB84_RS11345 (WEB84_11340) | - | 2107040..2107267 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| WEB84_RS11350 (WEB84_11345) | rimM | 2107388..2107903 (+) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| WEB84_RS11355 (WEB84_11350) | trmD | 2107903..2108637 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| WEB84_RS11360 (WEB84_11355) | rplS | 2108784..2109128 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| WEB84_RS11365 (WEB84_11360) | lepB | 2109230..2109781 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| WEB84_RS11370 (WEB84_11365) | ylqF | 2109802..2110692 (+) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| WEB84_RS11375 (WEB84_11370) | rnhB | 2110744..2111517 (+) | 774 | WP_001174712.1 | ribonuclease HII | - |
| WEB84_RS11380 (WEB84_11375) | sucC | 2111711..2112871 (+) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| WEB84_RS11385 (WEB84_11380) | sucD | 2112892..2113794 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| WEB84_RS11390 (WEB84_11385) | dprA | 2114116..2114750 (+) | 635 | Protein_2186 | DNA-processing protein DprA | - |
| WEB84_RS11395 (WEB84_11390) | topA | 2114895..2116973 (+) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| WEB84_RS11400 (WEB84_11395) | trmFO | 2117024..2118328 (+) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| WEB84_RS11405 (WEB84_11400) | xerC | 2118394..2119293 (+) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| WEB84_RS11410 (WEB84_11405) | hslV | 2119336..2119878 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| WEB84_RS11415 (WEB84_11410) | hslU | 2119901..2121292 (+) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| WEB84_RS11420 (WEB84_11415) | codY | 2121370..2122149 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| WEB84_RS11425 (WEB84_11420) | rpsB | 2122499..2123200 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| WEB84_RS11430 (WEB84_11425) | tsf | 2123304..2124191 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| WEB84_RS11435 (WEB84_11430) | pyrH | 2124258..2124980 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| WEB84_RS11440 (WEB84_11435) | frr | 2124983..2125540 (+) | 558 | WP_000531498.1 | ribosome recycling factor | - |
| WEB84_RS11445 (WEB84_11440) | uppS | 2125626..2126402 (+) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| WEB84_RS11450 (WEB84_11445) | cdsA | 2126420..2127211 (+) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| WEB84_RS11455 (WEB84_11450) | dxr | 2127235..2128377 (+) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| WEB84_RS11460 (WEB84_11455) | rseP | 2128394..2129650 (+) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| WEB84_RS11465 (WEB84_11460) | - | 2129760..2131460 (+) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| WEB84_RS11470 (WEB84_11465) | - | 2131585..2135886 (+) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| WEB84_RS11475 (WEB84_11470) | rimP | 2136219..2136689 (+) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| WEB84_RS11480 (WEB84_11475) | nusA | 2136707..2137813 (+) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| WEB84_RS11485 (WEB84_11480) | rnpM | 2137825..2138097 (+) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| WEB84_RS11490 (WEB84_11485) | - | 2138098..2138409 (+) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| WEB84_RS11495 (WEB84_11490) | infB | 2138414..2140474 (+) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| WEB84_RS11500 (WEB84_11495) | - | 2140471..2140752 (+) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| WEB84_RS11505 (WEB84_11500) | rbfA | 2140768..2141124 (+) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| WEB84_RS11510 (WEB84_11505) | truB | 2141211..2142134 (+) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| WEB84_RS11515 (WEB84_11510) | ribF | 2142178..2143149 (+) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| WEB84_RS11520 (WEB84_11515) | rpsO | 2143250..2143519 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| WEB84_RS11525 (WEB84_11520) | pnp | 2143680..2145818 (+) | 2139 | WP_000076733.1 | polyribonucleotide nucleotidyltransferase | - |
| WEB84_RS11530 (WEB84_11525) | - | 2145970..2146869 (+) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| WEB84_RS11535 (WEB84_11530) | - | 2146956..2148197 (+) | 1242 | WP_000592993.1 | pitrilysin family protein | - |
| WEB84_RS11540 (WEB84_11535) | - | 2148324..2148575 (+) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| WEB84_RS11545 (WEB84_11540) | dpaA | 2148850..2149752 (+) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| WEB84_RS11550 (WEB84_11545) | dpaB | 2149749..2150348 (+) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| WEB84_RS11555 (WEB84_11550) | asd | 2150499..2151545 (+) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| WEB84_RS11560 (WEB84_11555) | dapG | 2151569..2152801 (+) | 1233 | WP_000692470.1 | aspartate kinase | - |
| WEB84_RS11565 (WEB84_11560) | dapA | 2152813..2153691 (+) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| WEB84_RS11570 (WEB84_11565) | - | 2154457..2156127 (+) | 1671 | WP_000823085.1 | ribonuclease J | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=948623 WEB84_RS11420 WP_000421288.1 2121370..2122149(+) (codY) [Bacillus anthracis strain Sterne-CLR2-13]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=948623 WEB84_RS11420 WP_000421288.1 2121370..2122149(+) (codY) [Bacillus anthracis strain Sterne-CLR2-13]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |