Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACG3JF_RS04615 Genome accession   NZ_CP171732
Coordinates   936275..937057 (-) Length   260 a.a.
NCBI ID   WP_003103534.1    Uniprot ID   A0ABN0IQT1
Organism   Streptococcus parauberis strain DB-M3     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 931275..942057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS04580 (ACG3JF_04580) - 931613..932245 (-) 633 WP_003107591.1 helix-turn-helix transcriptional regulator -
  ACG3JF_RS04585 (ACG3JF_04585) - 932596..932954 (+) 359 Protein_899 IS3 family transposase -
  ACG3JF_RS04590 (ACG3JF_04590) - 933007..933306 (-) 300 WP_003105267.1 rhodanese-like domain-containing protein -
  ACG3JF_RS04595 (ACG3JF_04595) - 933299..934954 (-) 1656 WP_004347392.1 FAD-dependent oxidoreductase -
  ACG3JF_RS04600 (ACG3JF_04600) - 934975..935298 (-) 324 WP_003107595.1 rhodanese-like domain-containing protein -
  ACG3JF_RS04605 (ACG3JF_04605) - 935434..935694 (+) 261 WP_003103711.1 metal-sensitive transcriptional regulator -
  ACG3JF_RS04610 (ACG3JF_04610) - 935725..936273 (-) 549 WP_003107596.1 cysteine hydrolase family protein -
  ACG3JF_RS04615 (ACG3JF_04615) codY 936275..937057 (-) 783 WP_003103534.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACG3JF_RS04620 (ACG3JF_04620) - 937237..938450 (-) 1214 Protein_906 pyridoxal phosphate-dependent aminotransferase -
  ACG3JF_RS04625 (ACG3JF_04625) - 938644..939096 (+) 453 WP_003103948.1 universal stress protein -
  ACG3JF_RS04630 (ACG3JF_04630) - 939126..940514 (-) 1389 WP_003107598.1 Cof-type HAD-IIB family hydrolase -
  ACG3JF_RS04635 (ACG3JF_04635) - 940586..941548 (+) 963 WP_003106022.1 asparaginase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28818.86 Da        Isoelectric Point: 4.3770

>NTDB_id=948438 ACG3JF_RS04615 WP_003103534.1 936275..937057(-) (codY) [Streptococcus parauberis strain DB-M3]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNNDRVEEFFEAKQFPDSYV
KAASRVYDTEANLTVENELTIFPVESKDDFPEGLTTIAPIYGGGMRLGSLIIWRNDEQFDDDDLILVEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEY

Nucleotide


Download         Length: 783 bp        

>NTDB_id=948438 ACG3JF_RS04615 WP_003103534.1 936275..937057(-) (codY) [Streptococcus parauberis strain DB-M3]
ATGCCAAATTTATTAGAAAAAACACGTAAGATTACGTCCATTCTACAGCGTTCCGTTGATAGTTTAGATACTGAACTACC
ATACAATACAATGGCATCTCGTTTAGCAGATATTATTGATTGTAATGCTTGTATTATTAATGGTGGTGGAACTCTATTGG
GTTATGCCATGAAATATAAAACAAATAATGACCGCGTTGAAGAGTTCTTTGAAGCGAAGCAATTTCCAGATTCATATGTT
AAAGCAGCAAGTCGTGTTTATGATACAGAAGCAAACTTAACTGTTGAGAACGAGTTAACAATCTTTCCAGTTGAATCTAA
AGATGACTTTCCAGAGGGATTGACAACAATTGCCCCAATTTATGGTGGCGGTATGCGATTGGGTTCATTAATTATTTGGC
GTAATGATGAACAATTTGATGATGATGATTTGATTTTGGTTGAAATTTCAAGTACTGTTGTAGGTATTCAATTACTTAAC
TTACAAACAGAAAACCTTGAAGAAACAATACGTAAACAAACTGCTGTAAATATGGCAATTAATACCCTATCTTATTCTGA
AATGAAAGCTGTCGCAGCTATTTTAGGTGAATTAGATGGTAACGAAGGACGTTTAACAGCATCAGTAATTGCTGATCGTA
TTGGAATTACGCGTTCTGTTATTGTTAATGCCTTACGTAAGCTTGAAAGTGCTGGGATTATTGAAAGTCGCTCACTTGGT
ATGAAGGGAACTTATTTAAAAGTTATTAATGAAGGTATCTTTGATAAACTAAAGGAATATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

67.704

98.846

0.669
  codY Bacillus subtilis subsp. subtilis str. 168

54.251

95

0.515