Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACG3JF_RS03980 Genome accession   NZ_CP171732
Coordinates   813833..816214 (-) Length   793 a.a.
NCBI ID   WP_162839403.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 808833..821214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS03960 (ACG3JF_03960) pknB 809016..810755 (-) 1740 WP_003107495.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  ACG3JF_RS03965 (ACG3JF_03965) - 810755..811495 (-) 741 WP_003102848.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  ACG3JF_RS03970 (ACG3JF_03970) rsmB 811533..812855 (-) 1323 WP_003105444.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACG3JF_RS03975 (ACG3JF_03975) fmt 812845..813780 (-) 936 WP_013794216.1 methionyl-tRNA formyltransferase -
  ACG3JF_RS03980 (ACG3JF_03980) priA 813833..816214 (-) 2382 WP_162839403.1 primosomal protein N' Machinery gene
  ACG3JF_RS03985 (ACG3JF_03985) rpoZ 816264..816581 (-) 318 WP_003102967.1 DNA-directed RNA polymerase subunit omega -
  ACG3JF_RS03990 (ACG3JF_03990) gmk 816606..817232 (-) 627 WP_003106012.1 guanylate kinase -
  ACG3JF_RS03995 (ACG3JF_03995) - 817341..818948 (-) 1608 WP_004234999.1 ribonuclease Y -
  ACG3JF_RS04000 (ACG3JF_04000) - 820310..820792 (+) 483 WP_003105588.1 S-ribosylhomocysteine lyase -
  ACG3JF_RS04005 (ACG3JF_04005) - 820868..821005 (-) 138 WP_003107500.1 hypothetical protein -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 90156.54 Da        Isoelectric Point: 8.2451

>NTDB_id=948432 ACG3JF_RS03980 WP_162839403.1 813833..816214(-) (priA) [Streptococcus parauberis strain DB-M3]
MMRVAHIIVDIPLMQTDKPFSYAIPDQLIGLVELGSRVHVPFGKSNRLLQGFIVGFSNLDGDYKEISDLLDVDPVLNSEQ
LQLADSLRKTVFSYKITLLKAMLPNLLNSHYDKELQVTENTSLQERNLIFNHKSSVLMSQLTSDQEALALKAIKNGRIEM
TYLAKDKKTIKTVSYYKVNKQLLMASEISARAKKKLQLKDFLLSHSEDGKLSDLRKDYSSDVVKYFVSNHLIDSYEEAVN
RSDAYFEKVESSHFLKLNHQQETAVQEITQAIGKDSNPFLIEGITGSGKTEVYLHTIDRVLKMGKTAIVLVPEISLTPQM
TNRFISRFGKLVAIMHSGLSDGEKFDEWKKIKTGQARVVVGARSAIFAPLENIGAIIIDEEHESTYKQESNPRYHARDVA
LLRAKFHQAVLVLGSATPSIESRARASRGLYHFIELTQRANPLAKIPEVEVVDFRDYIGKQSLSNYTPYLLDKIKDRLQK
NEQVVLMLNRRGYSSFIMCRDCGYVDGCPNCDISLTLHMDTKSMNCHYCGFQKEIPRICPNCQSKSIRYYGTGTQKAYDE
LLEAIPEARILRMDVDTTRKKGSHEKILAQFGNHEADILLGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRSSEKTFQL
LTQVAGRAGRAEKPGEVLIQTYNPNHYAIQMAKNQDYEAFYTYEMGIRQKMAYPPYYFTVGITLSLKDEQELVIKSYQVM
SILNENLSDKIKILGPTPKPVARTHNLYHYQIIVKYRFENNLEETLNTILDWTQAKGNKDLKVIIDQEPQNFM

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=948432 ACG3JF_RS03980 WP_162839403.1 813833..816214(-) (priA) [Streptococcus parauberis strain DB-M3]
TTGATGAGAGTTGCCCATATAATTGTAGATATCCCTTTAATGCAAACGGATAAACCTTTTAGTTATGCAATACCGGACCA
ACTGATTGGACTGGTTGAACTAGGTTCCCGAGTACACGTACCGTTTGGGAAAAGTAATCGCTTGTTACAAGGCTTTATCG
TTGGTTTTTCTAACCTTGATGGAGACTATAAAGAGATAAGTGACTTACTGGATGTAGATCCAGTTCTAAATTCAGAACAG
TTACAACTTGCAGACTCTTTAAGAAAAACAGTTTTTTCTTATAAAATTACTCTCCTCAAAGCTATGCTTCCCAATCTTCT
AAATTCGCATTATGATAAAGAATTGCAAGTTACAGAAAATACAAGTTTGCAAGAAAGAAATCTTATTTTTAATCATAAAT
CAAGTGTCTTGATGTCACAATTAACTAGTGACCAAGAAGCGTTGGCACTTAAAGCAATCAAAAATGGTCGTATTGAAATG
ACCTATCTGGCTAAAGATAAAAAAACGATCAAAACAGTTTCCTATTATAAGGTAAACAAACAATTATTAATGGCTTCAGA
AATCTCAGCCCGTGCAAAAAAGAAATTGCAACTTAAAGATTTTCTATTAAGTCATTCAGAAGATGGCAAGTTAAGTGACT
TGCGTAAAGATTATTCGAGTGATGTGGTCAAATATTTTGTTAGCAATCACTTAATTGATTCATATGAGGAAGCTGTCAAT
CGAAGTGATGCTTATTTTGAAAAGGTTGAGTCTTCTCACTTTTTAAAGCTGAATCACCAACAGGAAACTGCTGTTCAAGA
GATTACTCAGGCTATTGGGAAAGATTCTAATCCTTTCCTAATTGAAGGAATTACGGGTTCAGGTAAAACGGAGGTATACT
TACATACAATTGATCGTGTCCTTAAAATGGGAAAAACAGCTATTGTCCTAGTTCCTGAGATATCTTTGACACCACAAATG
ACCAACCGATTTATTTCACGTTTTGGGAAACTGGTTGCTATTATGCACTCGGGCTTATCCGACGGCGAAAAGTTTGATGA
GTGGAAAAAAATCAAGACTGGCCAAGCACGAGTAGTTGTTGGTGCGCGCTCAGCTATTTTTGCACCCTTAGAAAATATCG
GGGCTATCATCATTGATGAGGAACATGAGTCAACTTATAAGCAAGAATCTAATCCACGCTACCATGCACGAGATGTGGCT
TTATTGAGGGCAAAATTCCATCAAGCTGTATTAGTTTTAGGATCTGCAACACCAAGTATCGAAAGTAGGGCTCGAGCTAG
TCGAGGCTTATACCATTTTATTGAATTGACGCAACGTGCCAATCCTTTGGCTAAAATTCCAGAAGTGGAAGTTGTTGATT
TTAGAGACTATATTGGTAAACAATCACTTAGTAACTACACGCCTTATTTGTTAGACAAAATTAAAGACCGTTTGCAAAAA
AATGAGCAGGTTGTTTTGATGCTTAATAGACGTGGTTATTCAAGCTTCATCATGTGTCGTGATTGTGGTTATGTTGATGG
TTGTCCAAATTGTGACATTTCTTTAACCCTTCATATGGACACAAAGTCTATGAATTGTCATTATTGTGGTTTCCAAAAGG
AAATTCCGAGAATTTGTCCAAATTGTCAAAGTAAGAGTATCCGCTATTATGGGACGGGTACACAAAAAGCTTACGATGAA
TTGCTAGAAGCGATTCCTGAAGCGCGGATCCTCCGAATGGATGTTGATACGACTCGTAAAAAAGGAAGCCATGAGAAAAT
TCTTGCGCAATTTGGAAATCATGAGGCTGATATCTTATTAGGTACTCAAATGATTGCTAAAGGTTTAGATTTTCCTAATG
TCACTTTAGTCGGTGTTTTAAATGCTGATACCTCTTTAAACTTGCCGGATTTTAGGTCTTCTGAGAAGACCTTTCAGTTG
TTGACACAGGTTGCAGGTCGTGCGGGACGGGCAGAAAAACCCGGTGAGGTTTTAATTCAAACTTATAATCCCAATCATTA
TGCCATCCAAATGGCTAAAAATCAGGATTATGAAGCATTTTATACTTATGAAATGGGCATTCGTCAAAAGATGGCTTATC
CACCATATTATTTTACAGTTGGTATAACCTTATCCTTGAAAGACGAACAAGAATTAGTTATAAAATCTTATCAAGTTATG
TCCATATTAAATGAAAACTTATCTGACAAAATTAAGATTTTAGGTCCTACACCTAAACCGGTCGCACGGACGCATAATTT
ATACCATTATCAAATAATTGTAAAATATCGTTTTGAGAATAATTTAGAAGAGACATTAAATACTATTCTAGATTGGACGC
AAGCAAAAGGAAATAAAGATTTAAAAGTGATTATTGACCAAGAACCGCAAAATTTCATGTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(567-651)

Type III restriction enzyme, res subunit (ResIII)

(255-419)

Primosomal protein N C-terminal domain (PriA_C)

(695-789)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(508-533)

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Bacillus subtilis subsp. subtilis str. 168

47.783

100

0.489