Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   WDV80_RS05870 Genome accession   NZ_CP147733
Coordinates   1188675..1189721 (-) Length   348 a.a.
NCBI ID   WP_000410286.1    Uniprot ID   A0AAV3JNG8
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183675..1194721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS05865 (WDV80_05865) amiF 1187743..1188675 (-) 933 WP_000138506.1 ATP-binding cassette domain-containing protein Regulator
  WDV80_RS05870 (WDV80_05870) oppD 1188675..1189721 (-) 1047 WP_000410286.1 ABC transporter ATP-binding protein Regulator
  WDV80_RS05875 (WDV80_05875) - 1189734..1190765 (-) 1032 WP_000764052.1 ABC transporter permease -
  WDV80_RS05880 (WDV80_05880) - 1190775..1191689 (-) 915 WP_000598965.1 ABC transporter permease -
  WDV80_RS05885 (WDV80_05885) - 1191808..1193463 (-) 1656 WP_001118749.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38744.22 Da        Isoelectric Point: 4.7644

>NTDB_id=948382 WDV80_RS05870 WP_000410286.1 1188675..1189721(-) (oppD) [Streptococcus agalactiae strain SagR272_TC]
MEKETILSVNNLHVDFHTYAGEVKAIRDVNFELKKGETLAIVGESGSGKSVTTRTLIGLNAKNSEISGNVQFKGRNLVEL
SEEEWTKVRGNEISMIFQDPMTSLDPTMKIGMQIAEPMMIHQKISKKDALKLALELMKDVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAADPEILIADEPTTALDVTIQAQILNLMKKIQAERDSSIVFITHDLGVVAGMADRVAVMYAGKIVEFGTV
DEVFYNPQHPYTWGLLNSMPTTDTESGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHEEEPPYFKVSETHFAATWLL
DERSPKVLPPLPIQKRWEKWNEIEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=948382 WDV80_RS05870 WP_000410286.1 1188675..1189721(-) (oppD) [Streptococcus agalactiae strain SagR272_TC]
ATGGAAAAAGAAACTATTTTAAGTGTTAATAATCTTCATGTTGACTTCCACACATATGCTGGAGAAGTAAAAGCAATTCG
TGATGTCAACTTTGAATTAAAAAAAGGTGAGACTCTTGCAATCGTTGGTGAATCTGGTTCAGGAAAATCTGTAACTACCA
GAACTTTAATTGGTTTAAATGCTAAAAATTCAGAGATATCAGGGAATGTTCAATTTAAGGGGCGTAACCTTGTTGAACTA
TCAGAAGAAGAGTGGACTAAGGTACGCGGGAATGAGATTTCTATGATTTTCCAAGACCCTATGACTAGTTTGGATCCAAC
GATGAAAATTGGCATGCAAATAGCAGAACCAATGATGATTCATCAAAAAATTTCAAAAAAGGATGCTTTAAAATTAGCTC
TTGAGCTAATGAAAGATGTAGGTATCCCAAATGCTGAAGAGCATATTAATGATTACCCACATCAGTGGTCTGGAGGAATG
CGCCAACGTGCGGTTATAGCGATTGCTTTAGCTGCTGATCCTGAAATTCTTATTGCTGATGAACCAACGACTGCTTTAGA
TGTAACAATTCAAGCACAAATTTTGAACTTAATGAAAAAAATTCAAGCAGAACGAGACTCCTCCATTGTTTTCATAACTC
ATGACTTAGGGGTCGTTGCAGGGATGGCAGACCGTGTAGCAGTTATGTATGCAGGGAAAATTGTTGAATTTGGAACTGTT
GATGAAGTCTTTTATAATCCACAACATCCATATACTTGGGGATTATTGAATTCAATGCCGACAACCGACACAGAATCAGG
TAGTTTAGAGTCAATTCCGGGAACACCACCAGATTTGTTGAACCCACCTAAAGGAGATGCATTTGCAGCTCGTAATGAAT
TTGCATTAGATATTGATCATGAAGAAGAACCACCGTACTTCAAAGTTTCAGAAACACATTTCGCTGCTACATGGCTTTTA
GATGAAAGATCACCTAAGGTGCTTCCTCCATTACCGATCCAAAAACGTTGGGAAAAATGGAACGAGATTGAAGGGAGGAA
AGCCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

78.963

99.713

0.787
  amiE Streptococcus salivarius strain HSISS4

55.162

97.414

0.537
  amiE Streptococcus thermophilus LMG 18311

54.572

97.414

0.532
  amiE Streptococcus thermophilus LMD-9

54.572

97.414

0.532