Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACGTGP_RS05370 Genome accession   NZ_CP171398
Coordinates   1148527..1150284 (-) Length   585 a.a.
NCBI ID   WP_394556348.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain T24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1143527..1155284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS05340 (ACGTGP_05340) - 1144116..1144667 (+) 552 WP_000913439.1 tetratricopeptide repeat protein -
  ACGTGP_RS05345 (ACGTGP_05345) - 1144689..1145588 (-) 900 WP_023896438.1 NUDIX domain-containing protein -
  ACGTGP_RS05350 (ACGTGP_05350) hemP 1145725..1145895 (+) 171 WP_000993415.1 hemin uptake protein HemP -
  ACGTGP_RS05355 (ACGTGP_05355) - 1145961..1147319 (-) 1359 WP_261470964.1 ATP-binding protein -
  ACGTGP_RS05360 (ACGTGP_05360) - 1147316..1147978 (-) 663 WP_001221456.1 response regulator transcription factor -
  ACGTGP_RS05365 (ACGTGP_05365) - 1148086..1148445 (-) 360 WP_000783086.1 NirD/YgiW/YdeI family stress tolerance protein -
  ACGTGP_RS05370 (ACGTGP_05370) pilB 1148527..1150284 (-) 1758 WP_394556348.1 GspE/PulE family protein Machinery gene
  ACGTGP_RS05375 (ACGTGP_05375) - 1150572..1151840 (+) 1269 WP_001052947.1 DUF4010 domain-containing protein -
  ACGTGP_RS05380 (ACGTGP_05380) tsaA 1151847..1152575 (-) 729 WP_001985377.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ACGTGP_RS05385 (ACGTGP_05385) - 1152680..1153459 (+) 780 WP_000718711.1 ferredoxin--NADP reductase -
  ACGTGP_RS05390 (ACGTGP_05390) - 1153514..1154383 (-) 870 WP_394556350.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66840.67 Da        Isoelectric Point: 7.1310

>NTDB_id=946432 ACGTGP_RS05370 WP_394556348.1 1148527..1150284(-) (pilB) [Acinetobacter baumannii strain T24]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKDNGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINENEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHAILNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=946432 ACGTGP_RS05370 WP_394556348.1 1148527..1150284(-) (pilB) [Acinetobacter baumannii strain T24]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCGGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTTAGCCGTGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAAGCGCTTTTACA
ACTTGGCGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTAGTAGACTGGATATTGCAATTTGCATTTG
AACAGAGCGCCAGTGACATTCACATGGAACCGCGTAAAGACAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCCGTGATTTCTCGGATTAAAATTTTAGGGCGTCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGTTTAAAAACACGTACGCCGAAAGGACAAGAAACCGAACTACGCCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTACTAGTACGTTCTTTTCAGCAATTAGGTTTC
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAAGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACACACCAATGATGCGCCGTCTAGTTTGACCCGTTTACACGATTTAGGCG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAAATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAACATCTTATTAGCAGTCATGCGATATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTATTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(209-474)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.331

100

0.378