Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   V6U91_RS06455 Genome accession   NZ_CP147221
Coordinates   1270038..1270553 (-) Length   171 a.a.
NCBI ID   WP_002877326.1    Uniprot ID   -
Organism   Campylobacter jejuni strain LZ-CJ     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1265038..1275553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U91_RS06440 - 1265152..1266873 (-) 1722 WP_353940082.1 flagellin A -
  V6U91_RS06445 - 1266961..1268781 (-) 1821 WP_353940083.1 motility associated factor glycosyltransferase family protein -
  V6U91_RS06450 - 1268791..1270038 (-) 1248 WP_012006754.1 DUF2920 family protein -
  V6U91_RS06455 ctsG 1270038..1270553 (-) 516 WP_002877326.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V6U91_RS06460 tsaD 1270554..1271561 (-) 1008 WP_002892992.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  V6U91_RS06465 - 1271558..1272952 (-) 1395 WP_002877328.1 M99 family carboxypeptidase catalytic domain-containing protein -
  V6U91_RS06470 dxr 1272954..1274024 (-) 1071 WP_002866764.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  V6U91_RS06475 cdsA 1274021..1274746 (-) 726 WP_002866765.1 phosphatidate cytidylyltransferase -
  V6U91_RS06480 - 1274755..1275093 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18590.45 Da        Isoelectric Point: 6.4665

>NTDB_id=946265 V6U91_RS06455 WP_002877326.1 1270038..1270553(-) (ctsG) [Campylobacter jejuni strain LZ-CJ]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVIGVENVDLGN
FNGTKEVNFGVGNDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=946265 V6U91_RS06455 WP_002877326.1 1270038..1270553(-) (ctsG) [Campylobacter jejuni strain LZ-CJ]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTAATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAATCGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTGGCGTAGGCAATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93