Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SGN16_RS02070 Genome accession   NZ_CP146985
Coordinates   463740..465812 (+) Length   690 a.a.
NCBI ID   WP_210642476.1    Uniprot ID   -
Organism   Pseudomonas sp. G166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458740..470812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGN16_RS02050 comM 460952..462016 (+) 1065 WP_210642472.1 pilus assembly protein PilM Machinery gene
  SGN16_RS02055 - 462016..462582 (+) 567 WP_210642473.1 PilN domain-containing protein -
  SGN16_RS02060 pilO 462579..463202 (+) 624 WP_335943759.1 type 4a pilus biogenesis protein PilO -
  SGN16_RS02065 - 463199..463726 (+) 528 WP_210642475.1 pilus assembly protein PilP -
  SGN16_RS02070 pilQ 463740..465812 (+) 2073 WP_210642476.1 type IV pilus secretin PilQ Machinery gene
  SGN16_RS02075 aroK 465817..466335 (+) 519 WP_024779904.1 shikimate kinase AroK -
  SGN16_RS02080 aroB 466484..467584 (+) 1101 WP_335943760.1 3-dehydroquinate synthase -
  SGN16_RS02085 - 467595..469172 (+) 1578 WP_335943761.1 AAA family ATPase -

Sequence

Protein


Download         Length: 690 a.a.        Molecular weight: 74566.72 Da        Isoelectric Point: 5.2919

>NTDB_id=945334 SGN16_RS02070 WP_210642476.1 463740..465812(+) (pilQ) [Pseudomonas sp. G166]
MNRIFSALGISLWIALLSPMVHAANLKTLDVAALPGDRIELKLAFDGPPPTPRGYTTDQPARIALDLPGVSNQLASKRRD
LGGGNARSATVVEAGDRTRLIIGLTQLAPYDTRIEGNNLFVVVGKGIAPKATTQAARPAVASAAPARASAPVGKAIRGVD
FQRGTQGEGNVVIDLSDPSIAPDIQEREGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNAIAGGDRATISIEPSGTFD
YSTYQTDNKLTVSVRPMTVEDLQKRNSDRAAYSGEKLSLNFQDIEVRSVLQLIADFTNLNLVASDTVQGGITLRLQNVPW
DQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSAEAKAD
ERGTITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWSSSGVTTGD
STTIGTPGSTSTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQE
ASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVNDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQ
SKVVDKVPFLGDVPYLGRLFRRDVVSETKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2073 bp        

>NTDB_id=945334 SGN16_RS02070 WP_210642476.1 463740..465812(+) (pilQ) [Pseudomonas sp. G166]
ATGAACAGGATTTTTTCTGCCCTCGGTATTTCGCTATGGATAGCGCTGTTGTCGCCGATGGTTCATGCGGCCAACCTGAA
GACGCTGGATGTGGCGGCGTTGCCGGGTGACCGCATCGAGTTGAAACTCGCCTTCGATGGGCCGCCGCCGACGCCTCGGG
GCTACACCACCGATCAGCCGGCCCGGATCGCGCTGGACCTGCCCGGCGTGAGTAATCAACTGGCCAGTAAGCGCCGTGAC
CTGGGCGGTGGCAACGCACGCAGTGCCACCGTGGTCGAGGCGGGCGACCGTACGCGGCTGATCATCGGCCTTACCCAACT
GGCGCCGTATGACACCCGGATCGAAGGCAACAACCTGTTCGTGGTGGTTGGCAAAGGCATCGCGCCCAAGGCCACGACCC
AGGCTGCGCGTCCGGCGGTTGCCAGTGCCGCGCCTGCCAGGGCCAGCGCGCCGGTGGGCAAGGCTATCCGTGGCGTGGAT
TTCCAGCGCGGAACCCAGGGTGAAGGCAATGTGGTGATCGATCTGTCGGACCCTTCCATCGCTCCGGACATCCAGGAGCG
TGAAGGCAAGATCATCCTCAATTTCGCCAGGACCCAGTTGCCCGAGCCGCTGCGGGTGCGCCTGGACGTCAAGGACTTCG
CCACCCCGGTGCAGTTCGTCAATGCCATTGCCGGCGGCGACCGGGCGACCATCAGCATCGAACCCAGCGGCACCTTCGAT
TATTCCACCTACCAGACCGACAACAAGCTGACCGTCAGCGTCCGGCCGATGACGGTAGAGGACCTGCAAAAACGCAATTC
CGATCGCGCCGCCTACAGCGGTGAGAAACTCTCGCTGAACTTCCAGGACATCGAAGTGCGTTCGGTCCTGCAACTGATCG
CCGATTTCACCAATTTGAACCTGGTGGCAAGTGACACGGTGCAGGGCGGCATTACCCTGCGGCTACAGAACGTGCCTTGG
GATCAGGCGCTGGACTTGGTGCTCAAGACCAAAGGGCTGGATAAGCGCAAGGTCGGCAACGTGCTGCTGGTGGCCCCGGC
CGATGAAATCGCGGCGCGCGAGCGCCAGGAGTTGGAGTCCCAGAAGCAGATTGCCGACCTGGCGCCGCTGCGGCGTGAGT
TGCTGCAGGTCAATTACGCGAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGAAGCGAAAGCCGAT
GAGCGCGGCACGATCACGGTGGATGAGCGTACCAACAACATCATTGCCTACCAGACCCAGGACCGCCTCGACGAGCTACG
CCGGATCGTGGCGCAGCTGGATATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACGTCGATTACG
ACAAAAGCCTGGGTGTGCGTTGGGGCGGTTCGATCCAGAACAAGGGCAACTGGAGTTCCTCCGGGGTCACCACCGGCGAC
TCCACCACCATTGGCACGCCGGGCAGCACCAGCACCAACCAGCCATTTGTCGATCTGGGCGCGTCGGGTAACACCTCTGG
AATCGGCATTGCGTTCATTACCGACAACGTGCTGCTGGATCTGGAGCTGACGGCCATGGAGAAAACCGGCAACGGCGAAA
TCGTCTCCCAGCCCAAGGTGGTGACGTCCGACAAGGAGACGGCCAAAATCCTCAAGGGCACGGAGATTCCTTATCAGGAA
GCCAGCTCCAGCGGTGCTACCTCGGTGTCGTTCAAGGAGGCCTCGCTGTCGCTGGAGGTGACCCCGCAGATCACCCCGGA
CAACCGCATCATCATGGAGGTCAAGGTCACCAAGGATGAGCCGGACTACCTGAACAAGGTAAATGATGTGCCACCGATCA
AGAAAAACGAGGTCAACGCCAAGGTCCTGGTCAATGATGGCGAGACCATTGTGATTGGCGGGGTTTTCTCAAATACTCAG
AGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGTTTCGGA
GACAAAATCCGAGCTGCTGGTGTTCCTCACTCCGCGTATCATGAACAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(374-439)

AMIN domain (AMIN)

(37-121)

Secretin and TonB N terminus short domain (STN)

(300-346)

Bacterial type II and III secretion system protein (Secretin)

(525-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.905

100

0.757
  comQ Acinetobacter baylyi ADP1

42.029

100

0.42
  pilQ Acinetobacter baumannii strain A118

38.627

100

0.416
  pilQ Acinetobacter baumannii D1279779

38.627

100

0.416
  pilQ Legionella pneumophila strain Lp02

37.834

97.681

0.37
  pilQ Legionella pneumophila strain ERS1305867

37.834

97.681

0.37