Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WAA16_RS11235 Genome accession   NZ_CP146984
Coordinates   2214208..2214543 (+) Length   111 a.a.
NCBI ID   WP_095285385.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2209208..2219543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS11215 (WAA16_11215) gcvT 2209686..2210783 (-) 1098 WP_106048367.1 glycine cleavage system aminomethyltransferase GcvT -
  WAA16_RS11220 (WAA16_11220) - 2211345..2213015 (+) 1671 WP_338712046.1 SNF2-related protein -
  WAA16_RS11225 (WAA16_11225) - 2213030..2213827 (+) 798 WP_034661279.1 YqhG family protein -
  WAA16_RS11230 (WAA16_11230) - 2214010..2214174 (+) 165 WP_106031001.1 anti-repressor SinI family protein -
  WAA16_RS11235 (WAA16_11235) sinR 2214208..2214543 (+) 336 WP_095285385.1 helix-turn-helix domain-containing protein Regulator
  WAA16_RS11240 (WAA16_11240) - 2214611..2215411 (-) 801 WP_034661283.1 TasA family protein -
  WAA16_RS11245 (WAA16_11245) - 2215469..2216041 (-) 573 WP_066031752.1 signal peptidase I -
  WAA16_RS11250 (WAA16_11250) tapA 2216093..2216620 (-) 528 WP_060596834.1 amyloid fiber anchoring/assembly protein TapA -
  WAA16_RS11255 (WAA16_11255) - 2216920..2217198 (+) 279 WP_223250494.1 DUF3889 domain-containing protein -
  WAA16_RS11260 (WAA16_11260) - 2217232..2217426 (-) 195 WP_024718846.1 YqzE family protein -
  WAA16_RS11265 (WAA16_11265) comGG 2217485..2217868 (-) 384 WP_034661288.1 competence type IV pilus minor pilin ComGG -
  WAA16_RS11270 (WAA16_11270) comGF 2217865..2218365 (-) 501 WP_034661289.1 competence type IV pilus minor pilin ComGF -
  WAA16_RS11275 (WAA16_11275) comGE 2218304..2218621 (-) 318 WP_034661291.1 competence type IV pilus minor pilin ComGE -
  WAA16_RS11280 (WAA16_11280) comGD 2218605..2219051 (-) 447 WP_066030666.1 competence type IV pilus minor pilin ComGD -
  WAA16_RS11285 (WAA16_11285) comGC 2219044..2219337 (-) 294 WP_106072454.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12959.51 Da        Isoelectric Point: 4.9956

>NTDB_id=945306 WAA16_RS11235 WP_095285385.1 2214208..2214543(+) (sinR) [Bacillus pumilus strain S9]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=945306 WAA16_RS11235 WP_095285385.1 2214208..2214543(+) (sinR) [Bacillus pumilus strain S9]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937