Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WAA16_RS07690 Genome accession   NZ_CP146984
Coordinates   1540581..1541360 (+) Length   259 a.a.
NCBI ID   WP_012009951.1    Uniprot ID   A8FD81
Organism   Bacillus pumilus strain S9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535581..1546360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS07670 (WAA16_07670) trmFO 1536285..1537589 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WAA16_RS07675 (WAA16_07675) xerC 1537652..1538569 (+) 918 WP_060596252.1 tyrosine recombinase XerC -
  WAA16_RS07680 (WAA16_07680) hslV 1538584..1539129 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  WAA16_RS07685 (WAA16_07685) hslU 1539146..1540546 (+) 1401 WP_060596254.1 HslU--HslV peptidase ATPase subunit -
  WAA16_RS07690 (WAA16_07690) codY 1540581..1541360 (+) 780 WP_012009951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WAA16_RS07695 (WAA16_07695) flgB 1541648..1542037 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  WAA16_RS07700 (WAA16_07700) flgC 1542037..1542489 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  WAA16_RS07705 (WAA16_07705) fliE 1542501..1542818 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  WAA16_RS07710 (WAA16_07710) fliF 1542868..1544460 (+) 1593 WP_060596256.1 flagellar basal-body MS-ring/collar protein FliF -
  WAA16_RS07715 (WAA16_07715) fliG 1544472..1545488 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  WAA16_RS07720 (WAA16_07720) fliH 1545481..1546245 (+) 765 WP_034662367.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29044.31 Da        Isoelectric Point: 4.6614

>NTDB_id=945299 WAA16_RS07690 WP_012009951.1 1540581..1541360(+) (codY) [Bacillus pumilus strain S9]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=945299 WAA16_RS07690 WP_012009951.1 1540581..1541360(+) (codY) [Bacillus pumilus strain S9]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTGTTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAATAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGCACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCCGTTGTCCAAATGGCGATTAGTTCTCTATCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FD81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.753

100

0.958
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471