Detailed information NTG0945171

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: ACFW98_RS06735
• Genome accession: NZ_CP170719
• Coordinates: 1449433..1450701 (+)
• Length: 422 a.a.
• NCBI ID: WP_032870540.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5008
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1444433..1455701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFW98_RS06715 (ACFW98_06715)	-	1445805..1446425 (-)	621	WP_088461189.1	lipopolysaccharide assembly protein LapB	-
ACFW98_RS06720 (ACFW98_06720)	mnmA	1446513..1447628 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACFW98_RS06725 (ACFW98_06725)	-	1447665..1448804 (-)	1140	WP_395096894.1	cysteine desulfurase family protein	-
ACFW98_RS06730 (ACFW98_06730)	cymR	1448823..1449239 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
ACFW98_RS06735 (ACFW98_06735)	rarA	1449433..1450701 (+)	1269	WP_032870540.1	replication-associated recombination protein A	Machinery gene
ACFW98_RS06740 (ACFW98_06740)	-	1450819..1451583 (-)	765	WP_015240289.1	ThiF family adenylyltransferase	-
ACFW98_RS06750 (ACFW98_06750)	aspS	1451909..1453687 (-)	1779	WP_020956140.1	aspartate--tRNA ligase	-
ACFW98_RS06755 (ACFW98_06755)	hisS	1453702..1454976 (-)	1275	WP_032870543.1	histidine--tRNA ligase	-
ACFW98_RS06760 (ACFW98_06760)	-	1455333..1455503 (-)	171	WP_020956141.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46660.53 Da
• Isoelectric Point: 8.2451

>NTDB_id=945171 ACFW98_RS06735 WP_032870540.1 1449433..1450701(+) (rarA) [Bacillus amyloliquefaciens strain JP5008]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGNVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=945171 ACFW98_RS06735 WP_032870540.1 1449433..1450701(+) (rarA) [Bacillus amyloliquefaciens strain JP5008]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAGGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGGAAAGA
GCGCTCACAGATGAACACCGGGGGCTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTTGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAGACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGCGACCTTGAAAGCATATCAAGAAGACTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCAATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCTGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.974	99.763	0.908