Detailed information NTG0945102

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: ACFXAA_RS18280
• Genome accession: NZ_CP170717
• Coordinates: 3745712..3746980 (-)
• Length: 422 a.a.
• NCBI ID: WP_015240288.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5014
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3740712..3751980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAA_RS18255 (ACFXAA_18255)	-	3740911..3741081 (+)	171	WP_012118083.1	YrzK family protein	-
ACFXAA_RS18260 (ACFXAA_18260)	hisS	3741438..3742712 (+)	1275	WP_015417909.1	histidine--tRNA ligase	-
ACFXAA_RS18265 (ACFXAA_18265)	aspS	3742727..3744505 (+)	1779	WP_031378916.1	aspartate--tRNA ligase	-
ACFXAA_RS18275 (ACFXAA_18275)	-	3744831..3745595 (+)	765	WP_015240289.1	ThiF family adenylyltransferase	-
ACFXAA_RS18280 (ACFXAA_18280)	rarA	3745712..3746980 (-)	1269	WP_015240288.1	replication-associated recombination protein A	Machinery gene
ACFXAA_RS18285 (ACFXAA_18285)	cymR	3747175..3747591 (+)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
ACFXAA_RS18290 (ACFXAA_18290)	-	3747610..3748749 (+)	1140	WP_039254379.1	cysteine desulfurase family protein	-
ACFXAA_RS18295 (ACFXAA_18295)	mnmA	3748786..3749901 (+)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACFXAA_RS18300 (ACFXAA_18300)	-	3749989..3750609 (+)	621	WP_088461189.1	lipopolysaccharide assembly protein LapB	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46661.51 Da
• Isoelectric Point: 7.9149

>NTDB_id=945102 ACFXAA_RS18280 WP_015240288.1 3745712..3746980(-) (rarA) [Bacillus amyloliquefaciens strain JP5014]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=945102 ACFXAA_RS18280 WP_015240288.1 3745712..3746980(-) (rarA) [Bacillus amyloliquefaciens strain JP5014]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCTACAGCGATCGCAGGATCGACAAGCATCGCATTCAGAAAATTGAATGCCGTCATTCATAATAAAAAAGATATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ATCCGGCCATCAGAAGCCGCACCCAGATCTTCGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGGAAAGA
GCGCTCACAGATGAACACCGGGGGCTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCGCAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTTGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAGACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGCGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCACATGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCTGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	91.211	99.763	0.91