Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   ACFXAA_RS17735 Genome accession   NZ_CP170717
Coordinates   3634923..3637280 (+) Length   785 a.a.
NCBI ID   WP_060674766.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3629923..3642280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS17715 (ACFXAA_17715) rnhC 3631211..3632152 (-) 942 WP_060674770.1 ribonuclease HIII -
  ACFXAA_RS17720 (ACFXAA_17720) zapA 3632286..3632543 (+) 258 WP_039063375.1 cell division protein ZapA -
  ACFXAA_RS17725 (ACFXAA_17725) - 3632551..3633084 (+) 534 WP_003152534.1 CvpA family protein -
  ACFXAA_RS17730 (ACFXAA_17730) polX 3633190..3634902 (+) 1713 WP_007408115.1 DNA polymerase/3'-5' exonuclease PolX -
  ACFXAA_RS17735 (ACFXAA_17735) mutS/mutS2 3634923..3637280 (+) 2358 WP_060674766.1 endonuclease MutS2 Machinery gene
  ACFXAA_RS17740 (ACFXAA_17740) - 3637297..3637701 (+) 405 WP_003152541.1 DUF350 domain-containing protein -
  ACFXAA_RS17745 (ACFXAA_17745) - 3637840..3638007 (-) 168 WP_250637124.1 DUF2711 family protein -
  ACFXAA_RS17750 (ACFXAA_17750) - 3638004..3638522 (-) 519 WP_250637123.1 DUF2711 family protein -
  ACFXAA_RS17755 (ACFXAA_17755) - 3638597..3640285 (+) 1689 WP_395135456.1 AMP-binding protein -
  ACFXAA_RS17760 (ACFXAA_17760) - 3640374..3640958 (+) 585 WP_039255069.1 TetR/AcrR family transcriptional regulator -
  ACFXAA_RS17765 (ACFXAA_17765) - 3640972..3641751 (+) 780 WP_015417952.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87260.62 Da        Isoelectric Point: 6.4547

>NTDB_id=945093 ACFXAA_RS17735 WP_060674766.1 3634923..3637280(+) (mutS/mutS2) [Bacillus amyloliquefaciens strain JP5014]
MQQKVLSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLSDIQKQLDEVEEASAVMRLRGHAPFGGLTDIRSALRRAEI
GSVLTPAEFTELSGLLYAVKQMKHFISQMTEDGVGIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQ
LRTLESRVRDRLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMNNSLQQA
KVKEKQEIERILRMLTEHTAEHTQEIAQNVEVLQTLDFIFAKARYAKAMKATKPLMNGDGFIRLKKARHPLLPQDQVVAN
DIELGGDYSTIVITGPNTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNIV
NILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARVLATTHYPELKAYGYNRQGVMNASVEFDIETLSPTYK
LLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNEVDLMIASLEKSKKRADEELSETESIRKEAEKLHKELQQQIIE
LNAQKDKMMEEAEQKAAEKLEAAAKEAEQIIRELRSIKQEHRSFKEHELIDAKKRLGDAMPAFEKSKQPERKTEKKRELK
PGDEVKVLTFGQKGALLEKTGEKEWNVQIGILKMKVKEKDLEFLKSAPEPKKEKAITAVKGKDYHVSLELDLRGERYENA
LSRVEKYLDDAVLAGHPRVSIIHGKGTGALRKGVQDLLKNHRSVKSSRFGEAGEGGSGVTIVELK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=945093 ACFXAA_RS17735 WP_060674766.1 3634923..3637280(+) (mutS/mutS2) [Bacillus amyloliquefaciens strain JP5014]
GTGCAGCAAAAAGTGTTATCATCACTTGAATTTCATAAAGTAAAAGAACAGATTACCGCACATGCCGCCTCATCGCTCGG
CCGGGAGAAGCTTCTGCAGCTGAAACCTTTGACGGATCTCTCAGACATCCAAAAACAGCTGGATGAAGTCGAAGAAGCAT
CCGCGGTCATGCGCTTGAGAGGCCATGCTCCGTTCGGCGGCCTGACCGACATAAGATCCGCTTTACGGCGGGCGGAAATC
GGCAGTGTGCTGACGCCGGCGGAATTTACCGAATTGTCCGGGCTGCTGTATGCCGTTAAACAAATGAAGCATTTTATCAG
CCAAATGACAGAAGACGGCGTCGGCATTCCGCTGATACAGGCCCATGCAGAAGAACTGATTACATTGGGCGATTTGGAAA
GGGAGATTAACTCCTGCATTGATGACCATGGTGAAGTGCTTGATCATGCGTCTCCCGCTTTAAGGGGAATCCGCACGCAG
CTTAGGACACTTGAATCAAGAGTCAGAGACCGGCTTGAATCGATGCTGCGTTCATCTTCCGCTTCTAAAATGCTGTCTGA
CACCATCGTTACGATTCGGAATGACCGCTTTGTCATCCCGGTCAAACAGGAATACAGATCAAGCTACGGCGGAATTGTCC
ACGATACATCTTCATCCGGTGCGACACTGTTTATTGAACCGCAGGCGATCGTAGATATGAACAACTCGCTTCAGCAGGCG
AAAGTAAAAGAAAAACAGGAAATCGAACGGATTCTCCGGATGCTGACGGAGCATACGGCTGAACACACACAAGAAATCGC
TCAAAATGTGGAAGTGCTGCAGACACTGGATTTCATTTTCGCCAAAGCGAGATACGCAAAAGCGATGAAGGCGACAAAAC
CACTCATGAACGGAGACGGTTTTATCCGGCTGAAAAAAGCGCGCCATCCGCTGCTGCCCCAAGATCAAGTCGTGGCCAAC
GATATTGAACTGGGCGGAGATTATTCAACGATCGTCATCACGGGACCGAATACGGGCGGTAAAACCGTTACGTTAAAAAC
ACTCGGGCTGCTGACGATAATGGCGCAGGCAGGATTGCACATACCGGCTGATGAGGGATCGGAAGCAGCAGTATTTGACA
ATGTGTTTGCCGATATCGGCGATGAACAGTCGATCGAACAAAGTCTGAGTACGTTCTCATCCCACATGGTCAATATCGTC
AATATTTTAAAAGACGTGTCTGAAAACAGTCTTGTGCTGTTTGATGAACTCGGTGCCGGAACAGATCCGCAGGAAGGAGC
GGCGCTTGCCATGAGCATCCTTGACGAAGTTCACCGGACAAACGCCAGAGTGCTTGCGACAACCCATTATCCGGAACTGA
AAGCATACGGATATAACAGACAAGGCGTCATGAATGCCAGCGTTGAATTTGACATTGAAACGCTTTCGCCTACCTATAAG
CTTCTGATCGGAGTGCCGGGCCGAAGCAACGCATTTGAAATCTCAAGACGCCTTGGGCTTCCGGAGCATATCATCGGCCA
GGCGAAGTCAGAAATGACCGCCGAACATAACGAAGTCGATCTGATGATCGCATCCCTTGAAAAAAGCAAAAAAAGAGCGG
ATGAAGAGCTTTCTGAAACCGAATCAATCAGAAAAGAAGCAGAAAAACTGCACAAAGAGCTTCAGCAGCAAATCATTGAG
CTGAACGCCCAAAAAGATAAAATGATGGAAGAAGCCGAGCAGAAAGCTGCGGAAAAACTGGAAGCCGCCGCAAAAGAAGC
CGAACAGATCATCCGCGAACTCCGGTCCATCAAGCAAGAACACAGATCCTTTAAGGAACACGAGCTGATTGACGCCAAAA
AACGTCTCGGAGACGCGATGCCGGCTTTTGAAAAATCAAAGCAGCCGGAAAGAAAAACAGAGAAAAAACGCGAGCTCAAG
CCGGGCGACGAAGTAAAGGTGCTCACATTCGGACAAAAAGGGGCGCTGCTTGAGAAAACCGGCGAGAAAGAATGGAACGT
CCAAATCGGCATCCTTAAAATGAAGGTGAAGGAAAAAGATCTTGAGTTTCTCAAATCGGCTCCTGAACCGAAAAAAGAAA
AAGCAATCACCGCCGTAAAAGGGAAGGATTATCACGTATCCCTTGAACTTGACCTCAGGGGAGAGCGTTACGAAAACGCC
CTCAGCCGCGTCGAAAAATATTTAGATGACGCGGTGCTTGCCGGCCATCCGAGAGTGTCCATCATTCACGGAAAAGGCAC
GGGCGCCCTCCGAAAAGGGGTGCAGGATCTTCTGAAAAACCACCGCAGCGTGAAAAGCTCGCGGTTCGGGGAAGCGGGAG
AAGGAGGATCAGGCGTAACGATTGTCGAACTAAAATAA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(710-785)

MutS domain V (MutS_V)

(331-512)

MutS2 and Smr-associated SH3 domain (MSSS)

(641-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

87.643

100

0.876