Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V9W62_RS08020 Genome accession   NZ_CP146763
Coordinates   1657537..1658316 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain AP81     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1652537..1663316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W62_RS08000 (V9W62_08000) trmFO 1653224..1654531 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V9W62_RS08005 (V9W62_08005) xerC 1654601..1655518 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  V9W62_RS08010 (V9W62_08010) hslV 1655534..1656079 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  V9W62_RS08015 (V9W62_08015) hslU 1656087..1657499 (+) 1413 WP_256052823.1 HslU--HslV peptidase ATPase subunit -
  V9W62_RS08020 (V9W62_08020) codY 1657537..1658316 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V9W62_RS08025 (V9W62_08025) flgB 1658670..1659059 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  V9W62_RS08030 (V9W62_08030) flgC 1659059..1659511 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  V9W62_RS08035 (V9W62_08035) fliE 1659522..1659842 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  V9W62_RS08040 (V9W62_08040) fliF 1659885..1661495 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  V9W62_RS08045 (V9W62_08045) fliG 1661508..1662524 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  V9W62_RS08050 (V9W62_08050) fliH 1662517..1663272 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=944502 V9W62_RS08020 WP_003154263.1 1657537..1658316(+) (codY) [Bacillus velezensis strain AP81]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=944502 V9W62_RS08020 WP_003154263.1 1657537..1658316(+) (codY) [Bacillus velezensis strain AP81]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471