Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V9W59_RS08115 Genome accession   NZ_CP146762
Coordinates   1630049..1630828 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain JJ1041     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1625049..1635828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W59_RS08095 (V9W59_08095) trmFO 1625753..1627057 (+) 1305 WP_149126666.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V9W59_RS08100 (V9W59_08100) xerC 1627120..1628037 (+) 918 WP_024424182.1 tyrosine recombinase XerC -
  V9W59_RS08105 (V9W59_08105) hslV 1628052..1628597 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  V9W59_RS08110 (V9W59_08110) hslU 1628614..1630014 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  V9W59_RS08115 (V9W59_08115) codY 1630049..1630828 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V9W59_RS08120 (V9W59_08120) flgB 1631117..1631506 (+) 390 WP_335343480.1 flagellar basal body rod protein FlgB -
  V9W59_RS08125 (V9W59_08125) flgC 1631506..1631958 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  V9W59_RS08130 (V9W59_08130) fliE 1631970..1632287 (+) 318 WP_025092577.1 flagellar hook-basal body complex protein FliE -
  V9W59_RS08135 (V9W59_08135) fliF 1632337..1633929 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  V9W59_RS08140 (V9W59_08140) fliG 1633941..1634957 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  V9W59_RS08145 (V9W59_08145) fliH 1634950..1635714 (+) 765 WP_149126664.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=944436 V9W59_RS08115 WP_007499612.1 1630049..1630828(+) (codY) [Bacillus safensis strain JJ1041]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=944436 V9W59_RS08115 WP_007499612.1 1630049..1630828(+) (codY) [Bacillus safensis strain JJ1041]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTTCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471