Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOS_RS05865 Genome accession   NZ_CP170436
Coordinates   1219877..1220650 (+) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1510     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1214877..1225650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOS_RS05845 trmFO 1215220..1216527 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACFIOS_RS05850 xerC 1216945..1217841 (+) 897 WP_410540841.1 tyrosine recombinase XerC -
  ACFIOS_RS05855 hslV 1217838..1218383 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOS_RS05860 hslU 1218449..1219852 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOS_RS05865 codY 1219877..1220650 (+) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOS_RS05870 - 1220701..1220793 (+) 93 WP_031785459.1 hypothetical protein -
  ACFIOS_RS05875 rpsB 1220992..1221759 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOS_RS05880 - 1221793..1221906 (+) 114 WP_001789890.1 hypothetical protein -
  ACFIOS_RS05885 tsf 1221941..1222822 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACFIOS_RS05890 pyrH 1222959..1223681 (+) 723 WP_000057330.1 UMP kinase -
  ACFIOS_RS05895 frr 1223700..1224254 (+) 555 WP_001280003.1 ribosome recycling factor -
  ACFIOS_RS05900 - 1224626..1225396 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=944404 ACFIOS_RS05865 WP_000055334.1 1219877..1220650(+) (codY) [Staphylococcus aureus strain t1510]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=944404 ACFIOS_RS05865 WP_000055334.1 1219877..1220650(+) (codY) [Staphylococcus aureus strain t1510]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428