Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V9W61_RS07925 Genome accession   NZ_CP146761
Coordinates   1568286..1569065 (+) Length   259 a.a.
NCBI ID   WP_268449535.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ1138     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563286..1574065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS07905 (V9W61_07905) trmFO 1563990..1565294 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V9W61_RS07910 (V9W61_07910) xerC 1565357..1566274 (+) 918 WP_039166693.1 tyrosine recombinase XerC -
  V9W61_RS07915 (V9W61_07915) hslV 1566289..1566834 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  V9W61_RS07920 (V9W61_07920) hslU 1566851..1568251 (+) 1401 WP_335352334.1 HslU--HslV peptidase ATPase subunit -
  V9W61_RS07925 (V9W61_07925) codY 1568286..1569065 (+) 780 WP_268449535.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V9W61_RS07930 (V9W61_07930) flgB 1569355..1569744 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  V9W61_RS07935 (V9W61_07935) flgC 1569744..1570196 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  V9W61_RS07940 (V9W61_07940) fliE 1570208..1570525 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  V9W61_RS07945 (V9W61_07945) fliF 1570576..1572168 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  V9W61_RS07950 (V9W61_07950) fliG 1572180..1573196 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  V9W61_RS07955 (V9W61_07955) fliH 1573189..1573953 (+) 765 WP_024720351.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28992.19 Da        Isoelectric Point: 4.6467

>NTDB_id=944375 V9W61_RS07925 WP_268449535.1 1568286..1569065(+) (codY) [Bacillus altitudinis strain JJ1138]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=944375 V9W61_RS07925 WP_268449535.1 1568286..1569065(+) (codY) [Bacillus altitudinis strain JJ1138]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAACTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATTCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAGATTGCAGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTGCGTAAGTTAGAAAGTGCAGGCGTTATTGAATCACGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAATAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.139

100

0.961
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471