Detailed information NTG0944322

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: V9W63_RS12550
• Genome accession: NZ_CP146760
• Coordinates: 2589301..2591679 (-)
• Length: 792 a.a.
• NCBI ID: WP_007408204.1
• Uniprot ID: A7Z743
• Organism: Bacillus velezensis strain JJ334
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2584301..2596679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V9W63_RS12515 (V9W63_12515)	-	2585373..2586101 (+)	729	WP_007408209.1	amino acid ABC transporter ATP-binding protein	-
V9W63_RS12520 (V9W63_12520)	-	2586122..2586949 (+)	828	WP_007408208.1	transporter substrate-binding domain-containing protein	-
V9W63_RS12525 (V9W63_12525)	-	2587006..2587656 (+)	651	WP_015240286.1	amino acid ABC transporter permease	-
V9W63_RS12530 (V9W63_12530)	-	2587675..2588331 (+)	657	WP_053103958.1	amino acid ABC transporter permease	-
V9W63_RS12535 (V9W63_12535)	-	2588367..2588498 (-)	132	WP_003152741.1	YrzQ family protein	-
V9W63_RS12540 (V9W63_12540)	-	2588520..2588711 (-)	192	WP_003152738.1	hypothetical protein	-
V9W63_RS12545 (V9W63_12545)	-	2588724..2589182 (-)	459	WP_007408205.1	PRC-barrel domain-containing protein	-
V9W63_RS12550 (V9W63_12550)	recD2	2589301..2591679 (-)	2379	WP_007408204.1	ATP-dependent RecD-like DNA helicase	Machinery gene
V9W63_RS12555 (V9W63_12555)	-	2591698..2592348 (-)	651	WP_015240287.1	tetratricopeptide repeat protein	-
V9W63_RS12560 (V9W63_12560)	mnmA	2592406..2593521 (-)	1116	WP_015417906.1	tRNA 2-thiouridine(34) synthase MnmA	-
V9W63_RS12565 (V9W63_12565)	-	2593558..2594697 (-)	1140	WP_012118078.1	cysteine desulfurase family protein	-
V9W63_RS12570 (V9W63_12570)	cymR	2594716..2595132 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
V9W63_RS12575 (V9W63_12575)	-	2595327..2596595 (+)	1269	WP_015240288.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88364.04 Da
• Isoelectric Point: 4.9490

>NTDB_id=944322 V9W63_RS12550 WP_007408204.1 2589301..2591679(-) (recD2) [Bacillus velezensis strain JJ334]
MDQLNIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILTDASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIETKQLIINTQTLLNQSAEGGRVTEMDAADGIIALGESKDIVIEGERCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMNVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSSQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=944322 V9W63_RS12550 WP_007408204.1 2589301..2591679(-) (recD2) [Bacillus velezensis strain JJ334]
GTGGATCAGCTGAACATCGAAGAACAGCCGTATGTAAAAGGCGTCATTCATACGGTCATTTATCACAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACCTACACATTTTACGGAAAAACCGCCACGCATCCTAAGTTCGGCCTGCAATTTCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATCATTCACTATTTATCAAGTGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTCGGAGACGGCGCGCTCAATAAAATTCTGACGGATGCATCGGTGCTTT
ACGATGTGCCGAAAATGTCGAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTTGAGCAGATT
ATGATCTCTCTGAACCAATACGGTTTCGGGCCCCAGCTATCCATGAAAATATATCAGGCCTACGAAACGGAAACACTGGA
GAAAATTCAGGAAAATCCTTATCAGCTTGTAAAAGACGTTGAAGGCATCGGCTTTGTGAAAGCTGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGAAACCACCCGGAGCGGATCAAAGCGGCTATCTTATATACAATTGAATCGACCTGTCTTTCAGAG
GGCCATACGTACATAGAAACAAAGCAGCTGATAATCAATACGCAAACGCTCCTGAATCAGTCAGCTGAAGGCGGCCGCGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGATATCGTCATAGAAGGAGAACGCTGCTATT
TTCCGTCCTTGTTTTACGCCGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCACTCGGTGAACTGGAAGAACGGATGAATGTTCAATACGCACCAAGCCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCACCGATGCTTTTACTGACCGGAGGACCTGGGACGGGGAAAACGACCGTTATTAAAG
GAATCGTGGAATTATACAGTGAACTGCACGGAGTATCGCTTGACCCCGGTGATTATAAAAAAGACGAGGCGTTCCCGGTG
CTGCTTGCCGCGCCGACGGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCGGCTGTTACGATACACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATAGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATCTGGCTCGCCAGCCATTTGTTTAAGGCGCTTCCTAAGCACATTCAGCTCATTGTCGTCGGTGAT
GAAGACCAGCTTCCTTCAGTAGGACCGGGGCAGGTGCTCAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGCCT
GACAGATATTTACCGTCAGGCTGAAGGATCATCCATTGTGGAACTTGCGCATGATATGAAAAAAGGACTGCTTCCAAAGG
GGCTGACCGCGCCGACAAAGGACCGCTCATTTATCCGCTGTAATTCTTCACAGATTAAAGAAGTCGTGGATCAGGTCGTC
TCGAACGCGTTAAAAAAGGGGTATACCTCCAGGGATATTCAAGTGCTTGCCCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGCGATATCGGCGAAATCGTA
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCATTTGACGGCAACGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCACGCGTACTGCTGTTCGATTCATAAGTCGCAGGGAAGCGAATTCCCGATTGTCG
TCCTGCCTGTCGTCAAAGGCTACTATCGAATGCTCAGGAGAAATCTGCTTTATACCGCCATTACAAGGGCGAAAAAATTT
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACATCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCCCTGCAAAAAGAGCTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATCACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

3D structure

• AlphaFold DB: A7Z743

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.875	99.874	0.888