Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOI_RS08015 Genome accession   NZ_CP170432
Coordinates   1581081..1581854 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain t1476     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576081..1586854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOI_RS07980 - 1576334..1577104 (-) 771 WP_000473705.1 isoprenyl transferase -
  ACFIOI_RS07985 frr 1577477..1578031 (-) 555 WP_001280006.1 ribosome recycling factor -
  ACFIOI_RS07990 pyrH 1578050..1578772 (-) 723 WP_000057330.1 UMP kinase -
  ACFIOI_RS07995 tsf 1578909..1579790 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ACFIOI_RS08000 - 1579825..1579938 (-) 114 WP_001789890.1 hypothetical protein -
  ACFIOI_RS08005 rpsB 1579972..1580739 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOI_RS08010 - 1580938..1581030 (-) 93 WP_001790530.1 hypothetical protein -
  ACFIOI_RS08015 codY 1581081..1581854 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOI_RS08020 hslU 1581879..1583282 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOI_RS08025 hslV 1583348..1583893 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOI_RS08030 xerC 1583890..1584786 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  ACFIOI_RS08035 trmFO 1585203..1586510 (-) 1308 WP_410534512.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=944248 ACFIOI_RS08015 WP_000055337.1 1581081..1581854(-) (codY) [Staphylococcus aureus strain t1476]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=944248 ACFIOI_RS08015 WP_000055337.1 1581081..1581854(-) (codY) [Staphylococcus aureus strain t1476]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428