Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   V9W60_RS11415 Genome accession   NZ_CP146759
Coordinates   2242277..2242612 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ61     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2237277..2247612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W60_RS11395 (V9W60_11395) gcvT 2237753..2238850 (-) 1098 WP_072367814.1 glycine cleavage system aminomethyltransferase GcvT -
  V9W60_RS11400 (V9W60_11400) - 2239412..2241082 (+) 1671 WP_008342199.1 SNF2-related protein -
  V9W60_RS11405 (V9W60_11405) - 2241097..2241894 (+) 798 WP_335364408.1 YqhG family protein -
  V9W60_RS11410 (V9W60_11410) - 2242079..2242243 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  V9W60_RS11415 (V9W60_11415) sinR 2242277..2242612 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  V9W60_RS11420 (V9W60_11420) - 2242680..2243480 (-) 801 WP_335364407.1 TasA family protein -
  V9W60_RS11425 (V9W60_11425) - 2243539..2244111 (-) 573 WP_017357979.1 signal peptidase I -
  V9W60_RS11430 (V9W60_11430) tapA 2244161..2244688 (-) 528 WP_268432013.1 amyloid fiber anchoring/assembly protein TapA -
  V9W60_RS11435 (V9W60_11435) - 2244959..2245273 (+) 315 WP_234898394.1 DUF3889 domain-containing protein -
  V9W60_RS11440 (V9W60_11440) - 2245308..2245502 (-) 195 WP_008342191.1 YqzE family protein -
  V9W60_RS11445 (V9W60_11445) comGG 2245563..2245946 (-) 384 WP_024718845.1 competence type IV pilus minor pilin ComGG -
  V9W60_RS11450 (V9W60_11450) comGF 2245943..2246440 (-) 498 WP_034647459.1 competence type IV pilus minor pilin ComGF -
  V9W60_RS11455 (V9W60_11455) comGE 2246382..2246696 (-) 315 WP_039166034.1 competence type IV pilus minor pilin ComGE -
  V9W60_RS11460 (V9W60_11460) comGD 2246680..2247126 (-) 447 WP_096881621.1 competence type IV pilus minor pilin ComGD -
  V9W60_RS11465 (V9W60_11465) comGC 2247119..2247412 (-) 294 WP_024718841.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=944244 V9W60_RS11415 WP_017357978.1 2242277..2242612(+) (sinR) [Bacillus altitudinis strain JJ61]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=944244 V9W60_RS11415 WP_017357978.1 2242277..2242612(+) (sinR) [Bacillus altitudinis strain JJ61]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928