Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V9W60_RS07960 Genome accession   NZ_CP146759
Coordinates   1571016..1571795 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain JJ61     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566016..1576795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W60_RS07940 (V9W60_07940) trmFO 1566720..1568024 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V9W60_RS07945 (V9W60_07945) xerC 1568087..1569004 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  V9W60_RS07950 (V9W60_07950) hslV 1569019..1569564 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  V9W60_RS07955 (V9W60_07955) hslU 1569581..1570981 (+) 1401 WP_039166692.1 HslU--HslV peptidase ATPase subunit -
  V9W60_RS07960 (V9W60_07960) codY 1571016..1571795 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V9W60_RS07965 (V9W60_07965) flgB 1572086..1572475 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  V9W60_RS07970 (V9W60_07970) flgC 1572475..1572927 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  V9W60_RS07975 (V9W60_07975) fliE 1572939..1573256 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  V9W60_RS07980 (V9W60_07980) fliF 1573307..1574899 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  V9W60_RS07985 (V9W60_07985) fliG 1574911..1575927 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  V9W60_RS07990 (V9W60_07990) fliH 1575920..1576684 (+) 765 WP_024720351.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=944237 V9W60_RS07960 WP_007499612.1 1571016..1571795(+) (codY) [Bacillus altitudinis strain JJ61]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=944237 V9W60_RS07960 WP_007499612.1 1571016..1571795(+) (codY) [Bacillus altitudinis strain JJ61]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471