Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   V7A35_RS09435 Genome accession   NZ_CP146754
Coordinates   1835618..1836553 (-) Length   311 a.a.
NCBI ID   WP_198493872.1    Uniprot ID   -
Organism   Lactococcus petauri strain L1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1830618..1841553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7A35_RS09410 (V7A35_09455) - 1830663..1831523 (-) 861 WP_019292237.1 S1 RNA-binding domain-containing protein -
  V7A35_RS09415 (V7A35_09460) frr 1831635..1832192 (-) 558 WP_017368646.1 ribosome recycling factor -
  V7A35_RS09420 (V7A35_09465) pyrH 1832221..1832937 (-) 717 WP_019292238.1 UMP kinase -
  V7A35_RS09425 (V7A35_09470) - 1833028..1834221 (-) 1194 WP_019292239.1 acetate kinase -
  V7A35_RS09430 (V7A35_09475) - 1834340..1835533 (-) 1194 WP_019292240.1 acetate kinase -
  V7A35_RS09435 (V7A35_09480) comYH 1835618..1836553 (-) 936 WP_198493872.1 class I SAM-dependent methyltransferase Machinery gene
  V7A35_RS09440 (V7A35_09485) - 1836599..1836829 (-) 231 WP_003133314.1 DUF3165 family protein -
  V7A35_RS09445 (V7A35_09490) typA 1836904..1838745 (-) 1842 WP_003133313.1 translational GTPase TypA -
  V7A35_RS09450 (V7A35_09495) - 1839066..1839278 (+) 213 WP_003133311.1 YqgQ family protein -
  V7A35_RS09455 (V7A35_09500) - 1839271..1840236 (+) 966 WP_003133309.1 ROK family glucokinase -
  V7A35_RS09460 (V7A35_09505) - 1840256..1840636 (+) 381 WP_003133308.1 rhodanese-like domain-containing protein -
  V7A35_RS09465 (V7A35_09510) - 1840676..1841122 (-) 447 WP_003133306.1 DNA starvation/stationary phase protection protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35081.10 Da        Isoelectric Point: 4.6120

>NTDB_id=944202 V7A35_RS09435 WP_198493872.1 1835618..1836553(-) (comYH) [Lactococcus petauri strain L1]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMVEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=944202 V7A35_RS09435 WP_198493872.1 1835618..1836553(-) (comYH) [Lactococcus petauri strain L1]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAATTTGTCTTGCTTCAAGGGTCACGTGTC
GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCATATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTGATGAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGG
TTGAGCAATCTTTCAAATATCTGAAAGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG
TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(133-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492