Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOU_RS06585 Genome accession   NZ_CP170426
Coordinates   1301080..1301853 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain t1492     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1296080..1306853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOU_RS06565 trmFO 1296424..1297731 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACFIOU_RS06570 xerC 1298148..1299044 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  ACFIOU_RS06575 hslV 1299041..1299586 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOU_RS06580 hslU 1299652..1301055 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOU_RS06585 codY 1301080..1301853 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOU_RS06590 - 1301904..1301996 (+) 93 WP_031788481.1 hypothetical protein -
  ACFIOU_RS06595 rpsB 1302195..1302962 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOU_RS06600 - 1302996..1303109 (+) 114 WP_001789890.1 hypothetical protein -
  ACFIOU_RS06605 tsf 1303144..1304025 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACFIOU_RS06610 pyrH 1304162..1304884 (+) 723 WP_000057330.1 UMP kinase -
  ACFIOU_RS06615 frr 1304903..1305457 (+) 555 WP_001280006.1 ribosome recycling factor -
  ACFIOU_RS06620 - 1305830..1306600 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=944053 ACFIOU_RS06585 WP_000055337.1 1301080..1301853(+) (codY) [Staphylococcus aureus strain t1492]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=944053 ACFIOU_RS06585 WP_000055337.1 1301080..1301853(+) (codY) [Staphylococcus aureus strain t1492]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428