Detailed information NTG0944023

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: V4331_RS08865
• Genome accession: NZ_CP146743
• Coordinates: 1781664..1782599 (-)
• Length: 311 a.a.
• NCBI ID: WP_341784104.1
• Uniprot ID: -
• Organism: Lactococcus formosensis subsp. formosensis strain L5
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1776664..1787599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4331_RS08840 (V4331_08845)	-	1776712..1777572 (-)	861	WP_096369055.1	S1 RNA-binding domain-containing protein	-
V4331_RS08845 (V4331_08850)	frr	1777682..1778239 (-)	558	WP_017368646.1	ribosome recycling factor	-
V4331_RS08850 (V4331_08855)	pyrH	1778268..1778984 (-)	717	WP_019292238.1	UMP kinase	-
V4331_RS08855 (V4331_08860)	-	1779075..1780268 (-)	1194	WP_165713502.1	acetate kinase	-
V4331_RS08860 (V4331_08865)	-	1780386..1781579 (-)	1194	WP_341784103.1	acetate kinase	-
V4331_RS08865 (V4331_08870)	comYH	1781664..1782599 (-)	936	WP_341784104.1	class I SAM-dependent methyltransferase	Machinery gene
V4331_RS08870 (V4331_08875)	-	1782645..1782875 (-)	231	WP_017368651.1	DUF3165 family protein	-
V4331_RS08875 (V4331_08880)	typA	1782950..1784791 (-)	1842	WP_017368652.1	translational GTPase TypA	-
V4331_RS08880 (V4331_08885)	-	1785111..1785323 (+)	213	WP_003133311.1	YqgQ family protein	-
V4331_RS08885 (V4331_08890)	-	1785316..1786284 (+)	969	WP_341784105.1	ROK family glucokinase	-
V4331_RS08890 (V4331_08895)	-	1786301..1786681 (+)	381	WP_017368654.1	rhodanese-like domain-containing protein	-
V4331_RS08895 (V4331_08900)	-	1786722..1787168 (-)	447	WP_096369051.1	DNA starvation/stationary phase protection protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34963.95 Da
• Isoelectric Point: 4.5506

>NTDB_id=944023 V4331_RS08865 WP_341784104.1 1781664..1782599(-) (comYH) [Lactococcus formosensis subsp. formosensis strain L5]
MDIEKIEKAFGLVLENIMTIQAELMTDFYDAFVEQNAAYLGALELASLAKENNDKVRSMNLTKSEWQKLFQFVLLQGSRI
APMQANHNLTPDSIGFIFNFIIEELHKDRSIRVLEFGSGTGNLAETLLVHLQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQMDAVKPQPLEAVDVVLSDLPVGYYPDDEAASHFQVHDKSEHSYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHIAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide

• Length: 936 bp

>NTDB_id=944023 V4331_RS08865 WP_341784104.1 1781664..1782599(-) (comYH) [Lactococcus formosensis subsp. formosensis strain L5]
ATGGATATAGAGAAAATCGAAAAAGCTTTTGGGTTGGTCCTTGAGAATATCATGACAATTCAAGCAGAGCTGATGACGGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCCTTAGAGCTGGCGTCACTGGCGAAGGAAAATAACG
ATAAAGTTCGTTCAATGAATCTTACGAAAAGTGAATGGCAAAAACTGTTTCAGTTTGTCTTGTTACAAGGCTCTCGTATT
GCACCGATGCAAGCAAATCATAATTTAACACCGGACTCTATTGGTTTTATCTTTAATTTCATCATTGAAGAGTTGCACAA
GGACCGATCGATTCGCGTGTTAGAGTTTGGTTCAGGAACGGGGAATTTAGCGGAAACGCTCTTGGTTCATCTGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGACGACCTCTTGTTGGATTTATCTGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATGGATGCTGTTAAACCTCAGCCCTTGGAAGCTGTGGACGTTGTCCTAAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAGCTGCTAGCCATTTTCAAGTACATGACAAATCAGAACATAGCTATGTGCACCACTTAATGA
TCGAGCAATCCTTCAAGTATTTGAAAGAGAGTGGCTTTGCACTTTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCAGAGTTTTTGAAGGCCTGGATTAAAGAACATGCACATATTGCTGCAGTCATTACATTACCTTCATCCCTCTTTAAAGG
GGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGACTTAGCAG
ACCGCTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (173-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492