Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V4331_RS00375 Genome accession   NZ_CP146743
Coordinates   75762..76553 (+) Length   263 a.a.
NCBI ID   WP_341784202.1    Uniprot ID   -
Organism   Lactococcus formosensis subsp. formosensis strain L5     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 70762..81553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4331_RS00345 (V4331_00345) rpmH 71471..71605 (+) 135 WP_003135255.1 50S ribosomal protein L34 -
  V4331_RS00350 (V4331_00350) - 71756..72667 (+) 912 WP_341784200.1 aldo/keto reductase -
  V4331_RS00355 (V4331_00355) - 72846..73112 (+) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  V4331_RS00360 (V4331_00360) ruvX 73112..73540 (+) 429 WP_017368693.1 Holliday junction resolvase RuvX -
  V4331_RS00365 (V4331_00365) - 73555..73878 (+) 324 WP_003133632.1 DUF1292 domain-containing protein -
  V4331_RS00370 (V4331_00370) - 74018..75625 (+) 1608 WP_341784201.1 glycosyltransferase -
  V4331_RS00375 (V4331_00375) codY 75762..76553 (+) 792 WP_341784202.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V4331_RS00380 (V4331_00380) gatC 76698..77003 (+) 306 WP_017368695.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  V4331_RS00385 (V4331_00385) gatA 77003..78475 (+) 1473 WP_165711745.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  V4331_RS00390 (V4331_00390) gatB 78477..79910 (+) 1434 WP_165711746.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  V4331_RS00395 (V4331_00395) - 79923..81278 (-) 1356 WP_341784203.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=943989 V4331_RS00375 WP_341784202.1 75762..76553(+) (codY) [Lactococcus formosensis subsp. formosensis strain L5]
MATLIEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=943989 V4331_RS00375 WP_341784202.1 75762..76553(+) (codY) [Lactococcus formosensis subsp. formosensis strain L5]
GTGGCTACTTTAATAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATTATTGATACAAAAGGGAAGCTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGTTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTACTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACAATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTCAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

81.749

100

0.817
  codY Bacillus subtilis subsp. subtilis str. 168

49.219

97.338

0.479