Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOM_RS06420 Genome accession   NZ_CP170425
Coordinates   1292785..1293558 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain t197     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1287785..1298558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOM_RS06400 trmFO 1288129..1289436 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACFIOM_RS06405 xerC 1289853..1290749 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  ACFIOM_RS06410 hslV 1290746..1291291 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOM_RS06415 hslU 1291357..1292760 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOM_RS06420 codY 1292785..1293558 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOM_RS06425 - 1293609..1293701 (+) 93 WP_001790530.1 hypothetical protein -
  ACFIOM_RS06430 rpsB 1293900..1294667 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOM_RS06435 - 1294701..1294814 (+) 114 WP_001789890.1 hypothetical protein -
  ACFIOM_RS06440 tsf 1294849..1295730 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACFIOM_RS06445 pyrH 1295867..1296589 (+) 723 WP_000057330.1 UMP kinase -
  ACFIOM_RS06450 frr 1296608..1297162 (+) 555 WP_001280006.1 ribosome recycling factor -
  ACFIOM_RS06455 - 1297535..1298305 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=943965 ACFIOM_RS06420 WP_000055337.1 1292785..1293558(+) (codY) [Staphylococcus aureus strain t197]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=943965 ACFIOM_RS06420 WP_000055337.1 1292785..1293558(+) (codY) [Staphylococcus aureus strain t197]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428