Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   RdKW20_RS00275 Genome accession   NZ_CP146693
Coordinates   58102..58785 (-) Length   227 a.a.
NCBI ID   WP_010869091.1    Uniprot ID   -
Organism   Haemophilus influenzae strain Rd-KW20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53102..63785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RdKW20_RS00260 (RdKW20_000052) nrdR 53907..54356 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  RdKW20_RS00265 (RdKW20_000053) recC 54411..57776 (-) 3366 WP_005693290.1 exodeoxyribonuclease V subunit gamma -
  RdKW20_RS00270 (RdKW20_000054) comQ 57822..58109 (-) 288 WP_032828334.1 DUF5374 domain-containing protein Machinery gene
  RdKW20_RS00275 (RdKW20_000055) comP 58102..58785 (-) 684 WP_010869091.1 DUF2572 family protein Machinery gene
  RdKW20_RS00280 (RdKW20_000056) comO 58785..59501 (-) 717 WP_005693287.1 type II secretion system protein J Machinery gene
  RdKW20_RS00285 (RdKW20_000057) comN 59501..60013 (-) 513 WP_005693285.1 type II secretion system protein Machinery gene
  RdKW20_RS00290 (RdKW20_000058) suhB 60213..61016 (+) 804 WP_005693284.1 inositol-1-monophosphatase -
  RdKW20_RS00295 (RdKW20_000059) nrfE 61125..63032 (+) 1908 WP_005693283.1 heme lyase NrfEFG subunit NrfE -
  RdKW20_RS00300 (RdKW20_000060) - 63032..63562 (+) 531 WP_005693282.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25484.32 Da        Isoelectric Point: 9.2671

>NTDB_id=943823 RdKW20_RS00275 WP_010869091.1 58102..58785(-) (comP) [Haemophilus influenzae strain Rd-KW20]
MTIQKGIITLTILIFISGLLTAFLLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIA
LEGSTDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVTDEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=943823 RdKW20_RS00275 WP_010869091.1 58102..58785(-) (comP) [Haemophilus influenzae strain Rd-KW20]
ATGACTATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACTGCGTTTTTATTGTTGGA
TGACAGCCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTTCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTTGTGACTGACGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAAGTTGAAATTAATGGCACCGTA
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGTGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

100

100

1