Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOE_RS05810 Genome accession   NZ_CP170411
Coordinates   1197822..1198595 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain t002     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192822..1203595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOE_RS05790 trmFO 1193165..1194472 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACFIOE_RS05795 xerC 1194890..1195786 (+) 897 WP_001015601.1 tyrosine recombinase XerC -
  ACFIOE_RS05800 hslV 1195783..1196328 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOE_RS05805 hslU 1196394..1197797 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOE_RS05810 codY 1197822..1198595 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOE_RS05815 - 1198669..1198743 (+) 75 WP_031761472.1 hypothetical protein -
  ACFIOE_RS05820 rpsB 1198942..1199709 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOE_RS05825 - 1199743..1199856 (+) 114 WP_001789890.1 hypothetical protein -
  ACFIOE_RS05830 tsf 1199891..1200772 (+) 882 WP_000201392.1 translation elongation factor Ts -
  ACFIOE_RS05835 pyrH 1200909..1201631 (+) 723 WP_000057330.1 UMP kinase -
  ACFIOE_RS05840 frr 1201650..1202204 (+) 555 WP_001280006.1 ribosome recycling factor -
  ACFIOE_RS05845 - 1202577..1203347 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=943522 ACFIOE_RS05810 WP_000055337.1 1197822..1198595(+) (codY) [Staphylococcus aureus strain t002]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=943522 ACFIOE_RS05810 WP_000055337.1 1197822..1198595(+) (codY) [Staphylococcus aureus strain t002]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428