Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOO_RS05475 Genome accession   NZ_CP170406
Coordinates   1154065..1154838 (+) Length   257 a.a.
NCBI ID   WP_054190201.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21635     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149065..1159838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOO_RS05455 trmFO 1149409..1150716 (+) 1308 WP_054190203.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACFIOO_RS05460 xerC 1151133..1152029 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  ACFIOO_RS05465 hslV 1152026..1152571 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOO_RS05470 hslU 1152637..1154040 (+) 1404 WP_054190202.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOO_RS05475 codY 1154065..1154838 (+) 774 WP_054190201.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOO_RS05480 - 1154889..1154981 (+) 93 WP_031788481.1 hypothetical protein -
  ACFIOO_RS05485 rpsB 1155180..1155947 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOO_RS05490 - 1155981..1156094 (+) 114 WP_001789890.1 hypothetical protein -
  ACFIOO_RS05495 tsf 1156129..1157010 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACFIOO_RS05500 pyrH 1157147..1157869 (+) 723 WP_000057330.1 UMP kinase -
  ACFIOO_RS05505 frr 1157888..1158442 (+) 555 WP_054190200.1 ribosome recycling factor -
  ACFIOO_RS05510 - 1158815..1159585 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28771.19 Da        Isoelectric Point: 6.0680

>NTDB_id=943345 ACFIOO_RS05475 WP_054190201.1 1154065..1154838(+) (codY) [Staphylococcus aureus strain t21635]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPTEYTERLM
EVKQTESNIDIDNALTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGMEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=943345 ACFIOO_RS05475 WP_054190201.1 1154065..1154838(+) (codY) [Staphylococcus aureus strain t21635]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAACTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGCATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTATGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428