Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOQ_RS08095 Genome accession   NZ_CP170404
Coordinates   1596546..1597319 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain t7960     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591546..1602319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOQ_RS08060 - 1591799..1592569 (-) 771 WP_000473706.1 isoprenyl transferase -
  ACFIOQ_RS08065 frr 1592942..1593496 (-) 555 WP_001280006.1 ribosome recycling factor -
  ACFIOQ_RS08070 pyrH 1593515..1594237 (-) 723 WP_000057330.1 UMP kinase -
  ACFIOQ_RS08075 tsf 1594374..1595255 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ACFIOQ_RS08080 - 1595290..1595403 (-) 114 WP_001789890.1 hypothetical protein -
  ACFIOQ_RS08085 rpsB 1595437..1596204 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOQ_RS08090 - 1596403..1596495 (-) 93 WP_031788481.1 hypothetical protein -
  ACFIOQ_RS08095 codY 1596546..1597319 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOQ_RS08100 hslU 1597344..1598747 (-) 1404 WP_000379045.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOQ_RS08105 hslV 1598813..1599358 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOQ_RS08110 xerC 1599355..1600251 (-) 897 WP_001015611.1 tyrosine recombinase XerC -
  ACFIOQ_RS08115 trmFO 1600668..1601975 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=943277 ACFIOQ_RS08095 WP_000055337.1 1596546..1597319(-) (codY) [Staphylococcus aureus strain t7960]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=943277 ACFIOQ_RS08095 WP_000055337.1 1596546..1597319(-) (codY) [Staphylococcus aureus strain t7960]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428