Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFION_RS08040 Genome accession   NZ_CP170399
Coordinates   1590652..1591425 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain t127     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585652..1596425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFION_RS08005 - 1585905..1586675 (-) 771 WP_000473705.1 isoprenyl transferase -
  ACFION_RS08010 frr 1587048..1587602 (-) 555 WP_001280006.1 ribosome recycling factor -
  ACFION_RS08015 pyrH 1587621..1588343 (-) 723 WP_000057330.1 UMP kinase -
  ACFION_RS08020 tsf 1588480..1589361 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ACFION_RS08025 - 1589396..1589509 (-) 114 WP_001789890.1 hypothetical protein -
  ACFION_RS08030 rpsB 1589543..1590310 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFION_RS08035 - 1590509..1590601 (-) 93 WP_031788481.1 hypothetical protein -
  ACFION_RS08040 codY 1590652..1591425 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFION_RS08045 hslU 1591450..1592853 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACFION_RS08050 hslV 1592919..1593464 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFION_RS08055 xerC 1593461..1594357 (-) 897 WP_001015602.1 tyrosine recombinase XerC -
  ACFION_RS08060 trmFO 1594774..1596081 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=943100 ACFION_RS08040 WP_000055337.1 1590652..1591425(-) (codY) [Staphylococcus aureus strain t127]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=943100 ACFION_RS08040 WP_000055337.1 1590652..1591425(-) (codY) [Staphylococcus aureus strain t127]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428