Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOF_RS07940 Genome accession   NZ_CP170397
Coordinates   1557660..1558433 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain t3841     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552660..1563433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOF_RS07905 - 1552913..1553683 (-) 771 WP_000473699.1 isoprenyl transferase -
  ACFIOF_RS07910 frr 1554056..1554610 (-) 555 WP_001280006.1 ribosome recycling factor -
  ACFIOF_RS07915 pyrH 1554629..1555351 (-) 723 WP_000057330.1 UMP kinase -
  ACFIOF_RS07920 tsf 1555488..1556369 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ACFIOF_RS07925 - 1556404..1556517 (-) 114 WP_001789890.1 hypothetical protein -
  ACFIOF_RS07930 rpsB 1556551..1557318 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOF_RS07935 - 1557517..1557609 (-) 93 WP_031788481.1 hypothetical protein -
  ACFIOF_RS07940 codY 1557660..1558433 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOF_RS07945 hslU 1558458..1559861 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOF_RS07950 hslV 1559927..1560472 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOF_RS07955 xerC 1560469..1561365 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  ACFIOF_RS07960 trmFO 1561782..1563089 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=943010 ACFIOF_RS07940 WP_000055337.1 1557660..1558433(-) (codY) [Staphylococcus aureus strain t3841]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=943010 ACFIOF_RS07940 WP_000055337.1 1557660..1558433(-) (codY) [Staphylococcus aureus strain t3841]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428