Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOP_RS06180 Genome accession   NZ_CP170392
Coordinates   1260707..1261480 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain t442     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255707..1266480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOP_RS06160 trmFO 1256050..1257357 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACFIOP_RS06165 xerC 1257775..1258671 (+) 897 WP_001015601.1 tyrosine recombinase XerC -
  ACFIOP_RS06170 hslV 1258668..1259213 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOP_RS06175 hslU 1259279..1260682 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOP_RS06180 codY 1260707..1261480 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOP_RS06185 - 1261554..1261628 (+) 75 WP_031761472.1 hypothetical protein -
  ACFIOP_RS06190 rpsB 1261827..1262594 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOP_RS06195 - 1262628..1262741 (+) 114 WP_001789890.1 hypothetical protein -
  ACFIOP_RS06200 tsf 1262776..1263657 (+) 882 WP_000201391.1 translation elongation factor Ts -
  ACFIOP_RS06205 pyrH 1263794..1264516 (+) 723 WP_103152264.1 UMP kinase -
  ACFIOP_RS06210 frr 1264535..1265089 (+) 555 WP_001280006.1 ribosome recycling factor -
  ACFIOP_RS06215 - 1265462..1266232 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=942902 ACFIOP_RS06180 WP_000055337.1 1260707..1261480(+) (codY) [Staphylococcus aureus strain t442]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=942902 ACFIOP_RS06180 WP_000055337.1 1260707..1261480(+) (codY) [Staphylococcus aureus strain t442]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428