Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACFIOJ_RS07695 Genome accession   NZ_CP170391
Coordinates   1540221..1540994 (-) Length   257 a.a.
NCBI ID   WP_054190201.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21642     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535221..1545994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOJ_RS07660 - 1535474..1536244 (-) 771 WP_000473705.1 isoprenyl transferase -
  ACFIOJ_RS07665 frr 1536617..1537171 (-) 555 WP_001280006.1 ribosome recycling factor -
  ACFIOJ_RS07670 pyrH 1537190..1537912 (-) 723 WP_410532489.1 UMP kinase -
  ACFIOJ_RS07675 tsf 1538049..1538930 (-) 882 WP_000201387.1 translation elongation factor Ts -
  ACFIOJ_RS07680 - 1538965..1539078 (-) 114 WP_001789890.1 hypothetical protein -
  ACFIOJ_RS07685 rpsB 1539112..1539879 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  ACFIOJ_RS07690 - 1540078..1540170 (-) 93 WP_031788481.1 hypothetical protein -
  ACFIOJ_RS07695 codY 1540221..1540994 (-) 774 WP_054190201.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACFIOJ_RS07700 hslU 1541019..1542422 (-) 1404 WP_410534055.1 ATP-dependent protease ATPase subunit HslU -
  ACFIOJ_RS07705 hslV 1542488..1543033 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACFIOJ_RS07710 xerC 1543030..1543926 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  ACFIOJ_RS07715 trmFO 1544343..1545650 (-) 1308 WP_054190203.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28771.19 Da        Isoelectric Point: 6.0680

>NTDB_id=942833 ACFIOJ_RS07695 WP_054190201.1 1540221..1540994(-) (codY) [Staphylococcus aureus strain t21642]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPTEYTERLM
EVKQTESNIDIDNALTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGMEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=942833 ACFIOJ_RS07695 WP_054190201.1 1540221..1540994(-) (codY) [Staphylococcus aureus strain t21642]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAACTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGCATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTTCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTATGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428