Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6986_RS07890 Genome accession   NZ_CP146358
Coordinates   1596248..1597027 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain yw6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591248..1602027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS07870 (V6986_07870) trmFO 1591952..1593256 (+) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6986_RS07875 (V6986_07875) xerC 1593319..1594236 (+) 918 WP_212042671.1 tyrosine recombinase XerC -
  V6986_RS07880 (V6986_07880) hslV 1594251..1594796 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  V6986_RS07885 (V6986_07885) hslU 1594813..1596213 (+) 1401 WP_338594894.1 HslU--HslV peptidase ATPase subunit -
  V6986_RS07890 (V6986_07890) codY 1596248..1597027 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6986_RS07895 (V6986_07895) flgB 1597316..1597705 (+) 390 WP_039178512.1 flagellar basal body rod protein FlgB -
  V6986_RS07900 (V6986_07900) flgC 1597705..1598157 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  V6986_RS07905 (V6986_07905) fliE 1598169..1598486 (+) 318 WP_039178515.1 flagellar hook-basal body complex protein FliE -
  V6986_RS07910 (V6986_07910) fliF 1598536..1600128 (+) 1593 WP_039178517.1 flagellar basal-body MS-ring/collar protein FliF -
  V6986_RS07915 (V6986_07915) fliG 1600140..1601156 (+) 1017 WP_058837706.1 flagellar motor switch protein FliG -
  V6986_RS07920 (V6986_07920) fliH 1601149..1601913 (+) 765 WP_338594897.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=942735 V6986_RS07890 WP_007499612.1 1596248..1597027(+) (codY) [Bacillus safensis strain yw6]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=942735 V6986_RS07890 WP_007499612.1 1596248..1597027(+) (codY) [Bacillus safensis strain yw6]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGGAAGCTTCTTGGTTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCAGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTATCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTTGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGACCGTGTGGGGATCACTC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471