Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V6984_RS12820 Genome accession   NZ_CP146256
Coordinates   2642213..2644057 (-) Length   614 a.a.
NCBI ID   WP_342756022.1    Uniprot ID   -
Organism   Kineothrix sp. IPX-CK     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2637213..2649057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6984_RS12795 (V6984_12795) rpmF 2637579..2637758 (-) 180 WP_031389896.1 50S ribosomal protein L32 -
  V6984_RS12800 (V6984_12800) - 2637761..2638285 (-) 525 WP_342756018.1 DUF177 domain-containing protein -
  V6984_RS12805 (V6984_12805) - 2638367..2639563 (-) 1197 WP_342756019.1 acetate kinase -
  V6984_RS12810 (V6984_12810) pta 2639707..2640708 (-) 1002 WP_342756020.1 phosphate acetyltransferase -
  V6984_RS12815 (V6984_12815) - 2640935..2642188 (+) 1254 WP_342756021.1 nucleotidyltransferase -
  V6984_RS12820 (V6984_12820) rcrQ 2642213..2644057 (-) 1845 WP_342756022.1 ABC transporter ATP-binding protein Regulator
  V6984_RS12825 (V6984_12825) - 2644057..2646207 (-) 2151 WP_342756023.1 ABC transporter ATP-binding protein -
  V6984_RS12830 (V6984_12830) - 2646200..2646661 (-) 462 WP_342756024.1 MarR family transcriptional regulator -
  V6984_RS12840 (V6984_12840) - 2647028..2647267 (-) 240 WP_342756025.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68091.86 Da        Isoelectric Point: 9.0193

>NTDB_id=942400 V6984_RS12820 WP_342756022.1 2642213..2644057(-) (rcrQ) [Kineothrix sp. IPX-CK]
MSENNSKPQRRMRGPGGGMMPGEKAKDFKGTTRKILQYMGAYKYGLLAVVIFAIGGTAFNIIGPKITSRAITETFNGVMA
KVAGTGGIDFEKIARILLLLLGLYAISALLSFIQGIIMTGISQKLSYRFRKEISQKIDRMPMKYFESKTVGEVLSRITND
VDTLGQSLNQSVTQLITSVTTIIGILIMMLSISPVMTLIAFVILPVSGVLIGGVVKFSQKYFVAQQKYLGKINGQVEEIY
SGHNIVKAFNREEQALKEFNETNTILYQSAWKSQFFSGMMQPIMNFVGNLGYVAVAVSGSLLVVKGTIEIGDIQAFIQYV
RNFTQPITQVAQVSNMLQSMAAAAERVFEFLGEEEEEQQKENAVSLKNVEGSVSFEHVRFGYKPDKIIIHDFSSEVKSGQ
KVAIVGPTGAGKTTMVKLLMRFYDVNGGKIRVDGHDITEIERSELRKAFGMVLQDTWLFKGTIMENIRYGRLDATDEEVI
AAAKAAHAHHFIQTLPGGYDMELNEEASNVSQGQKQLLTIARAILANNKIMILDEATSSVDMRTEARIQKAMNNLMKGRT
SFVIAHRLSTIRDADVILVMKDGDIIEQGNHEELLEKNGFYSELYKSQFEEITA

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=942400 V6984_RS12820 WP_342756022.1 2642213..2644057(-) (rcrQ) [Kineothrix sp. IPX-CK]
ATGAGCGAGAATAATTCAAAGCCTCAAAGAAGGATGCGTGGTCCCGGCGGAGGGATGATGCCGGGAGAAAAGGCGAAAGA
CTTTAAAGGAACTACCCGGAAGATTTTGCAATATATGGGGGCTTATAAATACGGACTATTGGCCGTTGTAATTTTTGCTA
TAGGAGGCACCGCATTCAATATCATAGGACCTAAGATAACGAGTAGGGCGATAACGGAAACTTTTAACGGTGTTATGGCA
AAGGTTGCGGGAACGGGAGGAATCGATTTCGAGAAAATCGCCCGTATTTTGCTTCTGTTACTCGGTCTCTATGCGATCAG
CGCGCTGCTGTCATTTATACAAGGGATAATCATGACGGGAATTTCCCAGAAGCTGAGTTATCGGTTCCGAAAAGAAATTT
CCCAGAAAATTGACCGTATGCCTATGAAGTATTTCGAGTCCAAGACGGTAGGGGAGGTATTATCGAGAATTACCAACGAT
GTGGATACCCTGGGACAGAGCTTGAACCAGAGCGTGACACAGCTTATCACCTCGGTAACGACGATTATCGGTATTCTTAT
TATGATGCTCAGCATCAGCCCGGTTATGACACTGATTGCTTTCGTCATTCTTCCGGTATCGGGAGTGCTCATCGGAGGGG
TGGTGAAATTTTCACAGAAATATTTCGTGGCTCAACAGAAATATTTGGGCAAAATTAACGGACAGGTGGAGGAAATTTAC
AGCGGTCACAATATCGTGAAGGCTTTTAACAGAGAGGAGCAGGCGCTGAAGGAATTCAATGAAACCAACACCATTTTGTA
CCAGTCGGCCTGGAAATCCCAGTTTTTTTCCGGAATGATGCAGCCTATCATGAATTTCGTAGGAAATCTGGGATATGTAG
CGGTGGCGGTGAGCGGAAGTTTGCTGGTAGTAAAAGGAACTATTGAAATCGGAGACATTCAGGCATTCATACAATATGTC
AGAAATTTCACGCAGCCGATTACTCAGGTGGCGCAGGTATCCAACATGCTTCAGTCTATGGCGGCGGCAGCGGAAAGGGT
GTTTGAATTCTTAGGTGAAGAAGAGGAAGAGCAGCAAAAGGAGAATGCGGTAAGCCTTAAAAACGTAGAAGGCAGCGTAA
GCTTTGAGCATGTGCGTTTTGGCTATAAGCCGGACAAAATCATTATCCACGATTTCAGCAGCGAGGTTAAATCGGGGCAA
AAAGTAGCAATAGTAGGCCCTACCGGCGCGGGTAAGACAACAATGGTTAAGCTTTTGATGCGTTTTTATGATGTGAACGG
CGGAAAGATACGCGTAGATGGCCATGATATAACGGAGATTGAGAGAAGCGAGCTGAGAAAGGCCTTTGGCATGGTGCTTC
AGGATACGTGGCTGTTTAAAGGAACGATTATGGAGAATATCCGGTATGGCAGGCTGGATGCTACGGACGAGGAGGTCATT
GCGGCAGCGAAAGCAGCTCATGCCCATCACTTTATCCAGACTTTGCCCGGCGGCTATGATATGGAGCTTAACGAGGAAGC
CAGTAACGTATCGCAGGGACAAAAGCAGCTTCTTACGATTGCCAGAGCAATCCTTGCAAATAATAAAATTATGATTTTGG
ATGAGGCCACGAGCTCTGTGGATATGAGAACAGAGGCTCGTATCCAGAAGGCAATGAACAACCTGATGAAAGGAAGAACC
AGCTTCGTCATCGCTCACCGTTTATCGACGATACGGGATGCAGATGTGATATTGGTAATGAAGGACGGCGATATCATCGA
GCAGGGTAATCACGAGGAGCTGTTAGAAAAGAACGGCTTCTATTCGGAATTGTATAAATCTCAATTCGAGGAGATAACGG
CATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(47-326)

ABC transporter (ABC_tran)

(390-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.6

94.951

0.48