Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V6B14_RS13000 Genome accession   NZ_CP146246
Coordinates   2783457..2785907 (-) Length   816 a.a.
NCBI ID   WP_338652726.1    Uniprot ID   -
Organism   Sporosarcina psychrophila strain TMP10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2756138..2785907 2783457..2785907 within 0


Gene organization within MGE regions


Location: 2756138..2785907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6B14_RS12855 (V6B14_12875) - 2756138..2757277 (+) 1140 WP_338652703.1 site-specific integrase -
  V6B14_RS12860 (V6B14_12880) lepA 2757371..2759194 (-) 1824 WP_067208324.1 translation elongation factor 4 -
  V6B14_RS12865 (V6B14_12885) spoIIP 2759250..2760086 (-) 837 WP_338652705.1 stage II sporulation protein P -
  V6B14_RS12870 (V6B14_12890) gpr 2760130..2761173 (-) 1044 WP_067208319.1 GPR endopeptidase -
  V6B14_RS12875 (V6B14_12895) rpsT 2761523..2761774 (+) 252 WP_067208317.1 30S ribosomal protein S20 -
  V6B14_RS12880 (V6B14_12900) holA 2761836..2762852 (-) 1017 WP_067208314.1 DNA polymerase III subunit delta -
  V6B14_RS12885 (V6B14_12905) - 2763226..2763360 (+) 135 WP_082786541.1 YqzM family protein -
  V6B14_RS12890 (V6B14_12910) - 2763415..2765706 (-) 2292 WP_338652710.1 DNA internalization-related competence protein ComEC/Rec2 -
  V6B14_RS12895 (V6B14_12915) - 2765703..2766266 (-) 564 WP_067208309.1 ComE operon protein 2 -
  V6B14_RS12900 (V6B14_12920) - 2766426..2767112 (-) 687 WP_338652712.1 helix-hairpin-helix domain-containing protein -
  V6B14_RS12905 (V6B14_12925) - 2767339..2768079 (-) 741 WP_067208305.1 class I SAM-dependent methyltransferase -
  V6B14_RS12910 (V6B14_12930) rsfS 2768076..2768423 (-) 348 WP_067208302.1 ribosome silencing factor -
  V6B14_RS12915 (V6B14_12935) yqeK 2768428..2768991 (-) 564 WP_338652714.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  V6B14_RS12920 (V6B14_12940) - 2768957..2769550 (-) 594 WP_067208296.1 nicotinate-nucleotide adenylyltransferase -
  V6B14_RS12925 (V6B14_12945) yhbY 2769566..2769856 (-) 291 WP_067208293.1 ribosome assembly RNA-binding protein YhbY -
  V6B14_RS12930 (V6B14_12950) aroE 2769863..2770690 (-) 828 WP_338652718.1 shikimate dehydrogenase -
  V6B14_RS12935 (V6B14_12955) yqeH 2770704..2771804 (-) 1101 WP_338652720.1 ribosome biogenesis GTPase YqeH -
  V6B14_RS12940 (V6B14_12960) - 2771807..2772325 (-) 519 WP_338656878.1 YqeG family HAD IIIA-type phosphatase -
  V6B14_RS12945 (V6B14_12965) sigK 2772930..2773637 (+) 708 WP_067208284.1 RNA polymerase sporulation sigma factor SigK -
  V6B14_RS12950 (V6B14_12970) mtnN 2773954..2774646 (-) 693 WP_067208280.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  V6B14_RS12955 (V6B14_12975) - 2774671..2775366 (-) 696 WP_067208279.1 YrrS family protein -
  V6B14_RS12960 (V6B14_12980) greA 2775629..2776105 (-) 477 WP_067208276.1 transcription elongation factor GreA -
  V6B14_RS12965 (V6B14_12985) udk 2776212..2776850 (-) 639 WP_067208274.1 uridine kinase -
  V6B14_RS12970 (V6B14_12990) - 2776913..2777548 (-) 636 WP_082786540.1 O-methyltransferase -
  V6B14_RS12975 (V6B14_12995) mltG 2777574..2778698 (-) 1125 WP_067208270.1 endolytic transglycosylase MltG -
  V6B14_RS12980 (V6B14_13000) - 2779194..2779493 (-) 300 WP_067208268.1 DUF1292 domain-containing protein -
  V6B14_RS12985 (V6B14_13005) ruvX 2779504..2779923 (-) 420 WP_067208266.1 Holliday junction resolvase RuvX -
  V6B14_RS12990 (V6B14_13010) - 2779920..2780192 (-) 273 WP_067208264.1 IreB family regulatory phosphoprotein -
  V6B14_RS12995 (V6B14_13015) alaS 2780275..2782908 (-) 2634 WP_338652725.1 alanine--tRNA ligase -
  V6B14_RS13000 (V6B14_13020) recD2 2783457..2785907 (-) 2451 WP_338652726.1 ATP-dependent RecD-like DNA helicase Machinery gene

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 90843.36 Da        Isoelectric Point: 4.9811

>NTDB_id=942313 V6B14_RS13000 WP_338652726.1 2783457..2785907(-) (recD2) [Sporosarcina psychrophila strain TMP10]
MEGNNMAGNTDEVFLIGRPVVTIFHNPDSLFTIAKLKVRETNSGNEDKEIIVKGSFPQLNPEDDYKFTGKLVNHPTYGAQ
FDVHTFAKEMPATETGLVHYLSGDLFPGIGMKTAQTIVKKLGKDAIKKILDDPSVLGTIPKLADDKKETLISVLEQNMGL
ERTIIQLNEWGFGPQIAMRIYQKYREESVSLLSENPYRLIEEIEGVGFQRADELGKNLGITGNHPSRIKAAILHSMNQAV
QSAGHVYVEAEAILPDVKRLLEMSQRIDIPFADISQAIIVLVEEGKLSAEERRLYIPSLYFSEIGIAAKLERIMENDTAD
QFPVSEIRKAVGEVEERLGVNYAETQVAAIETALHSPLMILTGGPGTGKTTVIRGFVEVYAELHGLSLDPKEYAKKKEPF
PIVLAAPTGRAAKRMSESTGLPAMTIHRLLGFNGQEKDEETEREVEGRLIIIDEMSMVDTWLAHQLLKALANDVQLLFVG
DQDQLPPVGPGQVLRDMLDSGKVPIIELTEVFRQSEGSSIIEMAHMIKRSEWTDDITKKTSDRSFIKAGSDRILEVVEQV
VKNAITKGHRIKDIQVLAPMYRGPAGIDGLNKMIQEMVNPPGPKRKEVVFGEAIYRIGDKVLQLVNQPESNVFNGDMGEV
IAIIKAKETIDKKELLVVSYDGIEVTYERNDLNQLTLAYCCSIHKSQGSEFPIVIMPIVRGHRKMLRRNLLYTGITRAKN
FLILCGEPEEFRAGIARTDELERQTTLKERLNGDVVELVAMESPDPERAKVSNEAHVSSEDSQPVIFSLTMETFLSIDPL
IGMKGVTPYEFLEVSD

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=942313 V6B14_RS13000 WP_338652726.1 2783457..2785907(-) (recD2) [Sporosarcina psychrophila strain TMP10]
ATGGAAGGGAACAACATGGCGGGAAATACGGATGAAGTTTTTTTGATTGGACGACCAGTCGTGACAATCTTCCATAACCC
CGACAGCCTTTTTACAATCGCGAAATTAAAAGTTCGTGAAACGAATAGTGGGAATGAAGATAAAGAAATCATCGTTAAAG
GCAGTTTTCCACAACTGAATCCAGAAGATGACTATAAATTTACAGGTAAACTAGTTAATCATCCGACATACGGTGCGCAG
TTTGATGTGCATACCTTTGCGAAAGAGATGCCGGCAACAGAAACGGGACTGGTCCATTATCTGTCAGGTGATTTGTTTCC
GGGCATCGGGATGAAGACAGCTCAAACAATTGTTAAAAAGCTAGGCAAGGATGCTATTAAAAAAATACTTGACGATCCGT
CTGTTCTTGGTACTATTCCGAAACTAGCGGATGATAAAAAAGAGACATTGATTTCCGTTTTGGAGCAGAATATGGGGCTT
GAGCGGACAATTATCCAATTGAATGAATGGGGATTCGGACCGCAAATCGCTATGCGCATTTATCAGAAGTATCGTGAAGA
ATCGGTTTCATTGCTGTCGGAAAATCCATATCGACTTATTGAAGAAATTGAAGGGGTAGGTTTTCAGCGTGCGGACGAAC
TCGGCAAAAACCTAGGCATTACAGGAAACCACCCTTCAAGAATCAAGGCAGCCATTCTTCATTCAATGAACCAAGCAGTG
CAATCAGCGGGGCATGTATACGTTGAAGCGGAAGCCATTTTGCCAGATGTCAAACGCCTGCTCGAAATGAGTCAGCGCAT
TGATATTCCATTTGCAGATATTTCCCAGGCAATTATTGTGCTTGTCGAGGAAGGCAAGCTATCTGCTGAAGAACGTAGAT
TATACATACCATCCCTCTACTTTTCAGAAATCGGTATCGCTGCGAAGCTTGAGCGCATTATGGAAAATGACACAGCGGAT
CAATTTCCTGTGTCTGAAATAAGAAAAGCGGTCGGGGAAGTTGAAGAGCGGCTAGGTGTTAATTATGCAGAAACACAAGT
TGCAGCGATTGAAACAGCCCTTCATTCGCCATTAATGATATTAACGGGCGGTCCTGGAACCGGGAAAACGACTGTTATTC
GTGGTTTTGTCGAAGTGTATGCAGAACTTCACGGATTGTCGCTCGACCCGAAAGAGTATGCCAAAAAGAAAGAACCATTT
CCGATTGTATTAGCGGCGCCTACTGGGCGTGCAGCTAAGCGTATGTCGGAATCGACTGGATTACCTGCGATGACAATTCA
CCGTTTGCTTGGATTCAACGGGCAGGAAAAGGATGAAGAGACTGAGCGGGAAGTTGAAGGGCGTCTCATTATCATTGATG
AAATGTCGATGGTCGATACATGGCTTGCCCATCAGTTATTAAAGGCACTTGCCAATGATGTACAACTGTTATTCGTTGGT
GACCAAGACCAGCTGCCGCCTGTAGGACCCGGTCAAGTACTTCGGGATATGCTAGACTCTGGGAAAGTTCCTATCATTGA
GTTGACTGAAGTATTTCGGCAAAGTGAAGGTTCGTCGATTATTGAAATGGCTCATATGATTAAACGGTCAGAATGGACAG
ATGACATAACGAAGAAAACATCGGATCGTTCATTTATCAAAGCGGGTAGCGATCGAATTCTCGAAGTCGTCGAACAAGTC
GTGAAAAATGCCATTACCAAAGGTCACCGCATTAAAGACATCCAAGTTCTTGCGCCGATGTATAGAGGACCGGCGGGTAT
TGATGGTTTAAACAAAATGATTCAGGAAATGGTCAATCCACCAGGACCAAAACGCAAAGAAGTGGTTTTTGGCGAAGCGA
TTTACCGAATTGGTGATAAAGTGCTTCAGCTTGTCAACCAACCCGAGAGTAATGTTTTTAACGGAGATATGGGTGAAGTC
ATTGCGATTATCAAAGCGAAAGAAACAATTGATAAAAAAGAACTACTAGTTGTTTCGTACGATGGAATTGAAGTTACCTA
TGAACGCAATGATCTTAACCAGCTGACACTTGCTTATTGCTGTTCAATCCATAAATCCCAGGGCAGCGAATTCCCAATCG
TCATTATGCCAATCGTCCGCGGTCATCGTAAAATGTTGCGTCGTAATTTACTGTATACCGGCATCACTCGTGCAAAAAAC
TTCCTTATCCTCTGTGGTGAGCCTGAAGAGTTCAGGGCAGGTATAGCACGAACTGACGAATTGGAGAGGCAGACGACATT
AAAAGAACGGTTAAACGGCGATGTCGTTGAACTGGTAGCTATGGAGTCTCCTGATCCTGAGCGTGCAAAGGTTTCTAATG
AGGCGCATGTGAGTTCAGAGGATTCCCAACCTGTCATTTTCTCACTTACGATGGAAACTTTCCTATCAATCGATCCGCTG
ATTGGCATGAAAGGGGTAACGCCTTATGAATTTCTTGAAGTTTCAGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-725)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-649)

AAA domain (AAA_30)

(342-550)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.54

98.897

0.52