Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V6670_RS15345 Genome accession   NZ_CP145889
Coordinates   3162894..3165326 (-) Length   810 a.a.
NCBI ID   WP_141905052.1    Uniprot ID   -
Organism   Lysinibacillus sp. Y5S-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3157894..3170326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6670_RS15335 (V6670_15335) - 3159889..3160854 (-) 966 WP_338651590.1 magnesium transporter CorA family protein -
  V6670_RS15340 (V6670_15340) hpaB 3161323..3162756 (-) 1434 WP_338651591.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  V6670_RS15345 (V6670_15345) recD2 3162894..3165326 (-) 2433 WP_141905052.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V6670_RS15350 (V6670_15350) hisA 3165516..3166283 (+) 768 WP_089933434.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  V6670_RS15355 (V6670_15355) - 3166280..3166567 (+) 288 WP_036124345.1 hypothetical protein -
  V6670_RS15360 (V6670_15360) - 3166698..3167549 (+) 852 WP_338651592.1 hypothetical protein -
  V6670_RS15365 (V6670_15365) - 3167566..3168288 (+) 723 WP_141905051.1 GTP pyrophosphokinase family protein -
  V6670_RS15370 (V6670_15370) - 3168432..3169874 (-) 1443 WP_338651593.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90823.16 Da        Isoelectric Point: 4.8869

>NTDB_id=940980 V6670_RS15345 WP_141905052.1 3162894..3165326(-) (recD2) [Lysinibacillus sp. Y5S-8]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRVILEDPSALDAVPRLSTEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAIFHVLNTAA
LSDGHVYLDAEHVLPLVKDMLEQSQRQEIPFEDISKACIELREEGKICGEETRLYLPSLYFSEVGIASKIVSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPNDLTAKTSDRSFIKASADQVVNVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGTAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDINEEIVEVEAMSIEEQELNNPVSIAQKLTVETAPYIHPMIGMN
DISPYDFLND

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=940980 V6670_RS15345 WP_141905052.1 3162894..3165326(-) (recD2) [Lysinibacillus sp. Y5S-8]
ATGACCGATCATCTAGATTTATTTGAACTCAATAAATTCTTTATACTCGGACGTCCAATCGTCTCTATCTTTCATAATGC
ACAAAATATGTATTCGATTGTACGTGTGAAAATACAAGAGACGAACTTACAATATGAAGATAAAGAAATTATCGTTGTTG
GTTATTTTCCACCATTACAAATGGATGAACAATATCGTTTTACGGGTATCTTAAAACAGCATCCTAAATATGGTGCTCAA
TTTCAAATCGAGACATTTACGAAAGAGGTTCCTGCAACTGAGCAAGGGATTATTCATTATTTATCTAGTGACTTATTTGT
AGGAATTGGGAAAAAAACGGCTGAAACGATTGTAGAAAAACTAGGGGCTAATGCCCTTCGTGTTATTTTAGAAGATCCTA
GTGCACTTGACGCCGTTCCACGCTTATCCACTGAAAAAAAAGAAGTTATTCATCGCACCATTGAACAAAATCTAGGCCTA
GAACGTGTGATGATTCAACTGAATGAGTGGGGCTTTGGTCCACAGCTCGGTATGAAAATCTATCAAACCTATCGAACTGA
AGCCATAGAATTACTAACTGAAAATCCATATCGCTTGATCGAAGATGTTGAAGGTGTTGGTTTCTTTCGGGCTGACGAAC
TAGGGGCTAAACTAGGAATTACTGGTAAACATCCTGATCGTGTCAAAGCAGCGATATTTCATGTGTTAAATACAGCTGCT
TTATCAGATGGACACGTCTATTTAGATGCGGAGCATGTCCTACCGCTAGTAAAGGATATGCTTGAACAAAGTCAGCGGCA
GGAGATCCCATTTGAGGACATTTCTAAAGCCTGTATTGAGCTACGTGAAGAAGGTAAAATTTGTGGTGAAGAAACTAGAT
TATATTTACCATCCCTTTATTTTTCTGAAGTAGGGATTGCCTCTAAAATCGTATCGCTCATTGAACGGAATAATAAGGCT
GAGCATTTTAGTAAGGACGAAATTAGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTCACCTACGCTGAGACACA
AGCAAATGCTATTGAACAGGCTTTAAATTCAGCCGTCATGATTTTGACAGGTGGACCGGGTACTGGGAAAACAACGGTTG
TACGTGGAGTGGTTGAAGTTTATGCAAAGCTACATGGTTTATCATTAAATCCAAAAGAATATGCTCAAAAAGAGGAACCA
TTTCCTATCATCCTTTGTGCACCAACTGGACGTGCTGCCAAGCGATTAGCCGAATCAACTGAGCTTCCTGCAATGACCAT
TCATCGTCTACTTGGCTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGTGAGGTAACAGGAAAGCTCATCATTGTGG
ATGAAATGTCTATGGTGGATACATGGCTTGCCCATCAGTTATTAAAAGCTTTACATGAAGATGTCCAGGTTGTTTTTGTA
GGGGACCAGGACCAGCTTCCACCAGTAGGGCCAGGACAGGTGTTAAAGGATTTATTAGCATCAAAGCAGCTGCCAACTGT
TGAATTAACAGATGTTTATCGACAAGCAGAGGGCTCTACAATTATTGAGCTTGCCCATCAAATTAAAAAGGGAACGATTC
CAAATGATTTAACAGCTAAAACATCTGATCGTTCGTTTATAAAGGCTTCAGCCGATCAAGTTGTCAATGTTGTCACGCAG
GTTGTCAAAAGTGCAGTAGCCAAAGGACAGGAAATTCGCAATATTCAGGTGCTAGCACCCATGTATAAAGGTACGGCTGG
TATTGATAATTTAAATAAAATGATTCAAGAGCTCATTAATCCAAATGATACGGGAACAAGAAAAGAGCTGGTCTTTGGTG
ATGTGACCTATCGCATAAAAGATAAAGTACTTCAGCTGGTCAATCAACCTGAGAGCAATGTTTTTAACGGGGATATGGGC
GAGGTCATCAGTATTATTAAAGCAAAAGAAACGATTGAAAAACAGGACTTACTGATCGTATCCTTTGATGGTATCGAGGT
AACCTATCAACGCAGTGATTTGAACCAATTGACACTAGCCTATTGCTGCTCTATTCATAAATCTCAAGGCTCTGAGTTTC
AAACAGTTATTATGCCAGTTGTCAGAGGATATTCAAAAATGCTGCGGCGTAATCTCTTATACACAGGGATTACTCGTGCT
AAAAACTTTTTGATTTTATGTGGTGAACCGGATGTACTAGCAGATGGCTTACAGCGTACAGATGACCTACAGCGTTTCAC
TTCTTTACGTGCAAGACTTAATCCGATGGATATCAATGAAGAAATTGTGGAAGTAGAGGCTATGTCAATAGAGGAGCAGG
AGTTGAACAATCCTGTCTCCATAGCACAAAAGCTAACAGTAGAAACAGCACCATATATTCATCCAATGATTGGGATGAAT
GATATCTCCCCTTATGATTTTTTAAATGACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.27

100

0.526