Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V6670_RS05650 Genome accession   NZ_CP145889
Coordinates   1213177..1214436 (+) Length   419 a.a.
NCBI ID   WP_058843925.1    Uniprot ID   A0A0W7YJ40
Organism   Lysinibacillus sp. Y5S-8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1208177..1219436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6670_RS05620 (V6670_05620) - 1208257..1209558 (+) 1302 WP_338653039.1 pitrilysin family protein -
  V6670_RS05625 (V6670_05625) - 1209555..1210283 (+) 729 WP_338653040.1 SDR family oxidoreductase -
  V6670_RS05630 (V6670_05630) - 1210327..1210584 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  V6670_RS05635 (V6670_05635) - 1210802..1211587 (+) 786 WP_008178931.1 DUF3388 domain-containing protein -
  V6670_RS05640 (V6670_05640) - 1211604..1212533 (+) 930 WP_186436101.1 RodZ domain-containing protein -
  V6670_RS05645 (V6670_05645) pgsA 1212581..1213159 (+) 579 WP_330493462.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V6670_RS05650 (V6670_05650) cinA 1213177..1214436 (+) 1260 WP_058843925.1 competence/damage-inducible protein A Machinery gene
  V6670_RS05655 (V6670_05655) recA 1214595..1215659 (+) 1065 WP_036121272.1 recombinase RecA Machinery gene
  V6670_RS05660 (V6670_05660) rny 1216220..1217779 (+) 1560 WP_036121270.1 ribonuclease Y -
  V6670_RS05665 (V6670_05665) - 1217899..1218693 (+) 795 WP_338653048.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45277.62 Da        Isoelectric Point: 4.7741

>NTDB_id=940968 V6670_RS05650 WP_058843925.1 1213177..1214436(+) (cinA) [Lysinibacillus sp. Y5S-8]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNTKRLEQAIEVAETRADLIIFSGGLGPTKDDLTKET
IARHLGVSLESDDVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVRVQDILDAQTNPTVAPLASDGEVTLRVTAKAATEQEAQQLIATKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNQLTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKIKQLGISKE
LIDTHGVVSSECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=940968 V6670_RS05650 WP_058843925.1 1213177..1214436(+) (cinA) [Lysinibacillus sp. Y5S-8]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
TCAATTATCCGAGCTTGGTATCAACGTTTTTTATCATACGGTAGTAGGCGATAATACGAAACGTTTAGAACAGGCTATTG
AAGTGGCGGAGACTCGTGCCGATTTAATTATTTTTTCGGGAGGACTTGGACCTACGAAAGATGATTTAACGAAGGAAACG
ATTGCTCGTCATCTTGGTGTTTCGCTTGAGTCTGATGATGTAGCATTAACGTATATTGAGCAATTTTTTGCCAAACGAGG
ACGTCCAATGACGGAGAATAATCGGAAACAGGCATTAATTTTAGCTGGCAGTGAAGTGCTAGCCAACCACCATGGAATGG
CGCCTGGTATGATTTTCACAAAAAATGATCGCACCTATATTTTACTTCCAGGACCACCAAAAGAGCTGGAACCTATGTTT
CAATTTGAAGCGAAACCAAAGCTTGCTGCGATGCTTAATGATGGAGGGATCATTGCATCACATGTGATGCGTTTCTATGG
GATTGGTGAAGCAGAGCTTGAGGTAAGAGTTCAAGACATTCTAGATGCCCAAACAAATCCTACAGTTGCCCCACTTGCCT
CTGATGGAGAAGTAACATTACGTGTTACAGCTAAAGCGGCTACAGAGCAGGAAGCTCAACAGCTTATAGCTACAAAGGTT
GCTGAGATACAGGCACTTGTGGGAGATTATCAATATGGTGTAGATGACGACTCTCTTGCCTCTAAAACGGTAGAAATGCT
ACTTGATAATCAGTTAACCATTGCTGCCGCAGAAAGTTTAACAGCTGGGTTATTTCAATCCGAGCTTGCGGAAATTCCTG
GGGTAGGCAATGCACTGATTGGTGGCGTTGTTACCTATGCTGCTGATGCAAAGATAAAACAGCTTGGCATTTCAAAAGAA
TTAATTGATACACATGGTGTTGTTAGCAGTGAGTGTGCGGCGGCAATGGCAAGTGCTGTTCGCGAAAAGTTTGCTACTAA
TATTGGAATTGGTCTTACAGGAGAAGCTGGTCCGACAGCGCATGATCACCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CTATCAATGATGAGGAGCCACTTACTTATTTACTGCATTTATCAGGCATGCGAAATACAAATCGACTACGTGCGGTGAAA
TTTACATGTCATTATTTAATGCAGCTTTTAGAAGAACGCGGTTATACAAAACGATATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W7YJ40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.913

98.329

0.52
  cinA Streptococcus pneumoniae TIGR4

45.17

91.408

0.413
  cinA Streptococcus mitis SK321

45.17

91.408

0.413
  cinA Streptococcus pneumoniae Rx1

45.17

91.408

0.413
  cinA Streptococcus pneumoniae R6

45.17

91.408

0.413
  cinA Streptococcus pneumoniae D39

44.909

91.408

0.411
  cinA Streptococcus mitis NCTC 12261

44.386

91.408

0.406
  cinA Streptococcus mutans UA159

44.063

90.453

0.399