Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AAEM60_RS15955 Genome accession   NZ_CP145886
Coordinates   3145425..3147788 (-) Length   787 a.a.
NCBI ID   WP_341356620.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3140425..3152788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS15940 (V2W31_15940) dtd 3141990..3142430 (-) 441 WP_299738671.1 D-aminoacyl-tRNA deacylase -
  AAEM60_RS15945 (V2W31_15945) - 3142444..3144633 (-) 2190 WP_299738673.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AAEM60_RS15950 (V2W31_15950) - 3144922..3145434 (-) 513 WP_044339542.1 adenine phosphoribosyltransferase -
  AAEM60_RS15955 (V2W31_15955) recJ 3145425..3147788 (-) 2364 WP_341356620.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AAEM60_RS15960 (V2W31_15960) - 3148072..3148218 (+) 147 WP_299738679.1 hypothetical protein -
  AAEM60_RS15965 (V2W31_15965) - 3148322..3148657 (-) 336 WP_299738681.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  AAEM60_RS15970 (V2W31_15970) - 3148671..3149555 (-) 885 WP_299739648.1 cation diffusion facilitator family transporter -
  AAEM60_RS15975 (V2W31_15975) secDF 3149702..3151966 (-) 2265 WP_299738683.1 protein translocase subunit SecDF -
  AAEM60_RS15980 (V2W31_15980) - 3152096..3152416 (-) 321 WP_299738686.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88604.77 Da        Isoelectric Point: 4.7428

>NTDB_id=940915 AAEM60_RS15955 WP_341356620.1 3145425..3147788(-) (recJ) [Rossellomorea sp. y25]
MLNSKTRWMMTESDQHKISELANELKVPSLVAKLLINRDLDDVEEARNFLFDTGDSFHDPFLFEDMKKATERIHKAIENG
ERILVYGDYDADGVSSTSVLMTVLRDIGADVEFYIPNRFSEGYGPNEGAFRWAKDEEFTLIITVDTGISAVNEAKLAKEL
EIDLIITDHHEPGPELPPAFALIHPKVEGTTYPFGELAGVGVAFKLAHALYGELPTHLLDLAAIGTIADLVPLRGENRLL
AKRGISQLRVSNRLGIKALCRIANAQQQEITEESIGFMIAPRINAVGRLGDADPAVDLMLTEDAEEAKALAEEIDSLNKE
RQAIVSQMTEEAVEMVENDFPLNENAVLVIGKEGWNPGVVGIVASRLVDKFYRPTIVLSFDSEKGTAKGSARSITGFDLF
KNLSTCRDILPHFGGHPMAAGMTLQLDDVAQFRNRLNELASTELTEDDLIPVTQLDASVTVDEISVESIEKLQLLAPFGM
HNPKPKWIIDSVSIEHYKKIGSAQNHLKLVLEDNGIQLDGVGFGLGELADHMTPFSNASVIGELSINEWNNRKKPQLFLH
DVKIEHWQLFDVRGIKQVHKWNGLIPEENKKIICFNPATLEKLSLEKDEVILLEDGSSLEGLSTDKASLVLLDLPTSKPI
LEDLLKKGRPHRIYAHFFQEEDHFFSTMPTRDHFKWYYGFLTKRGSFDLNKHGDDLAKYKGWSKETIDFMSQVFFDLKFV
TIVNGFISLNPAKTKKDLSESLTYQKKRQQYELENELLYSSYQELKTWFNERIEESVTIEEEVKAWT

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=940915 AAEM60_RS15955 WP_341356620.1 3145425..3147788(-) (recJ) [Rossellomorea sp. y25]
ATGTTAAACTCGAAAACACGTTGGATGATGACAGAATCAGATCAACATAAAATATCAGAACTGGCAAATGAATTAAAAGT
ACCTTCGCTTGTGGCGAAATTATTAATCAACCGGGACTTGGACGACGTAGAAGAAGCCCGGAATTTTTTATTTGATACAG
GCGATTCATTTCACGATCCATTTTTATTTGAAGATATGAAGAAAGCAACGGAAAGAATCCATAAAGCCATTGAAAATGGC
GAAAGGATTCTTGTTTATGGGGACTATGACGCTGATGGTGTAAGTAGTACGTCCGTATTGATGACAGTGTTAAGGGACAT
CGGAGCAGATGTGGAATTCTATATCCCAAACCGGTTCAGCGAAGGATACGGTCCGAATGAAGGAGCTTTTCGCTGGGCGA
AGGATGAAGAATTCACGCTCATCATAACCGTCGATACGGGAATATCTGCAGTGAACGAAGCAAAATTGGCAAAAGAACTG
GAGATCGATTTGATCATTACGGATCACCATGAACCTGGACCGGAATTGCCTCCAGCCTTTGCCTTGATTCATCCAAAGGT
CGAAGGGACTACCTATCCATTTGGAGAATTGGCAGGAGTGGGAGTGGCATTCAAACTGGCACATGCACTGTACGGTGAAC
TTCCTACCCACCTGCTTGATCTAGCTGCGATTGGAACCATTGCCGATTTAGTGCCGTTAAGAGGAGAAAATCGCCTTCTG
GCCAAGCGTGGGATTTCCCAGCTACGTGTTTCAAACCGATTGGGAATCAAAGCATTATGCCGAATTGCAAATGCTCAACA
ACAGGAAATCACGGAAGAATCCATTGGGTTCATGATTGCTCCCCGTATCAATGCAGTCGGACGGTTAGGGGATGCAGATC
CTGCCGTCGATCTTATGCTCACAGAAGATGCCGAGGAAGCGAAGGCCCTGGCTGAAGAAATTGACAGCTTGAATAAAGAA
AGACAGGCGATCGTGTCTCAAATGACCGAAGAAGCGGTTGAGATGGTGGAGAATGATTTTCCCCTGAACGAAAACGCTGT
ACTTGTAATCGGAAAAGAAGGCTGGAACCCTGGAGTAGTCGGGATTGTAGCTTCACGCTTAGTCGACAAGTTTTACCGTC
CGACCATCGTGCTTAGTTTCGATTCTGAAAAGGGAACGGCAAAGGGATCGGCAAGAAGTATCACAGGGTTCGATTTGTTC
AAGAATTTATCAACCTGCCGTGATATCCTTCCCCATTTTGGGGGACATCCGATGGCTGCAGGTATGACCTTACAGTTAGA
CGATGTAGCTCAGTTCAGAAACCGATTAAATGAGTTGGCTTCGACTGAATTGACGGAAGATGACCTTATACCCGTCACAC
AGCTTGATGCTTCTGTTACAGTGGATGAAATCTCTGTAGAGTCGATTGAAAAGCTTCAGCTTCTGGCCCCTTTCGGGATG
CATAATCCAAAACCGAAATGGATCATAGACAGTGTAAGCATCGAACACTATAAAAAAATCGGATCTGCACAAAATCATTT
GAAACTGGTCCTAGAAGACAATGGCATTCAATTGGACGGAGTCGGTTTTGGATTGGGAGAACTGGCGGATCATATGACCC
CATTTTCAAATGCCTCTGTAATAGGTGAGTTATCCATAAATGAATGGAATAACCGCAAGAAGCCTCAACTATTTTTACAT
GATGTGAAAATTGAGCATTGGCAATTATTTGATGTCCGGGGGATTAAACAAGTCCATAAATGGAATGGGCTCATACCTGA
AGAAAATAAAAAAATCATTTGTTTTAATCCGGCTACTTTAGAAAAGCTGAGTCTGGAAAAAGATGAAGTGATCCTGCTTG
AGGATGGTTCTTCACTCGAAGGACTTTCCACCGATAAGGCAAGTTTGGTGCTTCTGGATCTGCCGACTTCTAAACCAATA
CTTGAAGATCTCTTGAAGAAGGGGCGGCCGCACCGGATTTATGCTCATTTCTTCCAGGAAGAAGATCATTTTTTCAGTAC
GATGCCAACGCGTGACCATTTCAAATGGTACTATGGATTTTTAACAAAGCGCGGATCATTTGATTTAAATAAACATGGTG
ATGACCTGGCGAAATACAAAGGCTGGTCAAAAGAAACAATAGATTTCATGTCACAGGTGTTTTTTGATTTGAAGTTTGTT
ACAATAGTGAATGGATTTATTTCTCTTAATCCTGCTAAAACCAAGAAAGATCTTTCTGAATCTCTCACATATCAGAAGAA
ACGACAACAATACGAGCTGGAAAACGAATTGTTATATTCTTCCTATCAAGAGTTGAAGACTTGGTTTAATGAAAGGATAG
AAGAGTCTGTTACAATTGAGGAGGAAGTAAAAGCATGGACTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.341

98.729

0.546