Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AAEM60_RS15845 Genome accession   NZ_CP145886
Coordinates   3122398..3124788 (-) Length   796 a.a.
NCBI ID   WP_341356616.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3117398..3129788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS15820 (V2W31_15820) - 3118686..3119762 (-) 1077 WP_341356614.1 AI-2E family transporter -
  AAEM60_RS15825 (V2W31_15825) - 3120072..3120212 (-) 141 WP_113971292.1 YrzQ family protein -
  AAEM60_RS15830 (V2W31_15830) - 3120219..3120404 (-) 186 WP_034757353.1 hypothetical protein -
  AAEM60_RS15835 (V2W31_15835) bioB 3120608..3121609 (-) 1002 WP_299738631.1 biotin synthase BioB -
  AAEM60_RS15840 (V2W31_15840) - 3121627..3122223 (-) 597 WP_341356615.1 biotin transporter BioY -
  AAEM60_RS15845 (V2W31_15845) recD2 3122398..3124788 (-) 2391 WP_341356616.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AAEM60_RS15850 (V2W31_15850) - 3124806..3125477 (-) 672 WP_341356617.1 tetratricopeptide repeat protein -
  AAEM60_RS15855 (V2W31_15855) mnmA 3125651..3126766 (-) 1116 WP_299738639.1 tRNA 2-thiouridine(34) synthase MnmA -
  AAEM60_RS15860 (V2W31_15860) - 3126814..3127956 (-) 1143 WP_299738641.1 cysteine desulfurase family protein -
  AAEM60_RS15865 (V2W31_15865) - 3127969..3128388 (-) 420 WP_044339554.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 89743.48 Da        Isoelectric Point: 4.8174

>NTDB_id=940914 AAEM60_RS15845 WP_341356616.1 3122398..3124788(-) (recD2) [Rossellomorea sp. y25]
MSQQDSLKLFGEEEIYIKGRHLVTIFHNEENLYTVVRIRVDETNDTYEDKEAVVTGNFPKIHEDETYVFYGRFQDHPKFG
MQFHAKHFKKEIPQTTQGVVHYLSSDLFKGIGKKTAEKIVEHIGENAITKILENPSLLDEIPKLPKEKAKSIYDTLSEHQ
GLERVMIMLNDLGFGPQISMKVYQAYKEQALDIIQNNPYKLVEDIEGIGFTRADEIGSKIGLTGSHPDRIKAGCLYTLEQ
TCVKQGHVYLEAEELIVTVKELLEKSQPEKVDYTEISSQLVSLEEEGKVIGEGTKVYVPSLYFSEKGIVTNIEKILSQTQ
YKDQFPQSEFLLSLGALEDRLGVQYAPSQKEAIETALMSPMLLLTGGPGTGKTTVIQGIVELFADLHGCSLDPKDYKDEP
FPVLLTAPTGRAAKRMTESTGLPAMTIHRLLGWNGQEGFKSDEERAIEGKLLIVDEVSMVDTWLAHQLLKALPEDIQVIL
VGDEDQLPSVGPGQVLKDLLKSEVVPTVRLTDIYRQEEGSSIIELAHYMKRGQVPQDLTKQQKDRSFFPCRTNQISEVVQ
KVVENAKKKGYSPKDIQVLAPMYRGPAGIDRLNELLQEIFNSNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDIG
EIVSIFYAKENTEKQDMIIVSYEGNEVTYTRQDLMQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRS
KQFLILCGELDAFTLGVEREDDFLRKTTLSEKLNGLTAAENTAVSPEEGLPIEEILLNEDPMIGMEGISPYDFMKA

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=940914 AAEM60_RS15845 WP_341356616.1 3122398..3124788(-) (recD2) [Rossellomorea sp. y25]
TTGAGCCAGCAAGATTCTTTAAAGCTGTTTGGTGAGGAAGAAATCTATATAAAAGGAAGGCATCTTGTCACGATTTTTCA
TAATGAGGAAAATCTCTATACCGTCGTCCGGATCCGGGTGGACGAAACGAATGATACTTATGAAGACAAAGAAGCGGTCG
TAACCGGGAATTTTCCTAAGATTCATGAAGATGAGACCTACGTGTTTTATGGGAGGTTTCAAGATCACCCAAAGTTTGGC
ATGCAGTTTCATGCAAAGCATTTCAAGAAAGAAATCCCACAAACCACACAAGGTGTCGTCCATTATTTATCAAGTGATTT
ATTTAAAGGAATCGGGAAGAAAACAGCTGAGAAGATAGTGGAGCATATCGGGGAAAACGCCATAACCAAAATACTCGAAA
ATCCGAGCCTGCTGGATGAAATTCCAAAGCTTCCAAAGGAAAAGGCGAAAAGTATTTATGATACGCTTTCCGAGCATCAA
GGCTTGGAGCGGGTCATGATCATGCTGAATGACCTGGGATTTGGCCCCCAAATTTCCATGAAGGTCTATCAAGCCTATAA
AGAGCAGGCACTTGATATCATTCAAAATAATCCTTATAAGCTTGTGGAAGATATTGAAGGAATCGGCTTTACCCGGGCCG
ATGAGATTGGTTCTAAGATCGGGTTGACAGGCAGTCATCCCGACCGGATCAAAGCAGGCTGTTTATACACCCTTGAGCAA
ACATGTGTGAAGCAGGGCCATGTGTATCTCGAAGCAGAAGAACTCATTGTTACGGTGAAGGAGCTGCTTGAGAAAAGTCA
GCCCGAAAAGGTCGATTACACTGAAATATCCAGTCAACTGGTTTCCTTGGAGGAAGAGGGTAAAGTCATTGGAGAAGGCA
CAAAGGTATATGTTCCTTCTCTTTACTTCTCGGAAAAAGGAATCGTGACAAACATTGAAAAGATTTTGTCTCAAACCCAA
TATAAAGATCAATTTCCTCAATCCGAATTTCTTCTATCACTTGGAGCACTGGAGGACCGACTGGGAGTTCAATACGCACC
TTCACAAAAAGAAGCCATCGAAACAGCGTTGATGTCCCCCATGCTTCTGTTAACCGGAGGACCCGGAACCGGTAAGACGA
CCGTCATTCAGGGGATTGTGGAGCTGTTTGCGGATCTCCATGGCTGCTCCTTGGATCCCAAGGATTACAAGGATGAACCC
TTTCCTGTCTTACTGACAGCCCCGACTGGTCGAGCGGCAAAGCGCATGACAGAATCCACGGGCCTCCCTGCCATGACGAT
TCACCGACTTTTAGGCTGGAACGGTCAAGAAGGATTTAAGAGTGATGAAGAACGGGCGATTGAAGGAAAGTTGTTAATTG
TGGATGAAGTGTCCATGGTCGACACGTGGCTTGCCCATCAATTATTGAAGGCCCTGCCTGAGGATATTCAAGTGATACTT
GTCGGGGATGAGGATCAATTACCGTCTGTCGGTCCTGGCCAGGTACTAAAGGACCTATTGAAATCGGAAGTGGTGCCAAC
AGTCAGGTTAACGGATATTTATAGACAGGAAGAGGGCTCCTCCATTATTGAACTTGCTCATTATATGAAAAGGGGACAGG
TACCTCAAGACCTGACCAAACAGCAAAAGGATCGATCCTTCTTCCCATGCAGAACCAATCAAATATCCGAAGTCGTTCAA
AAAGTCGTTGAGAACGCGAAGAAAAAAGGGTACTCCCCAAAGGATATACAGGTCCTAGCTCCTATGTATCGAGGCCCTGC
AGGTATCGACCGATTGAATGAGCTTCTTCAGGAAATTTTCAATAGCAATGACGGTACCCGGAAAGAGATCGCCTTTGGAG
ATGTGAAATATCGTATTGGGGATAAGGTTCTTCAACTTGTCAATCAACCTGAAAACAATGTTTTCAACGGGGATATCGGT
GAAATCGTCTCGATCTTTTATGCGAAGGAAAACACCGAGAAGCAAGATATGATCATTGTTTCATATGAGGGAAATGAGGT
CACCTATACGAGGCAAGATCTCATGCAAATTACCCATGCGTATTGCTGCTCGATCCATAAGTCACAAGGAAGTGAGTTTC
CCATTGTGATCTTACCTGTCGTGAAAAGCTATTATCGGATGCTGAGAAGAAATCTTCTTTACACTGCCATTACCAGGAGC
AAGCAATTCCTCATTCTTTGTGGGGAGCTTGATGCTTTTACCCTTGGAGTAGAGAGGGAAGATGATTTTCTCCGCAAAAC
GACCCTAAGCGAGAAACTGAACGGTTTAACCGCTGCAGAAAACACGGCAGTTTCTCCTGAAGAAGGTTTACCCATTGAAG
AAATCTTGCTGAATGAGGATCCAATGATTGGAATGGAAGGCATCAGTCCCTATGATTTCATGAAAGCATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.965

99.749

0.618