Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   V6U70_RS09420 Genome accession   NZ_CP145868
Coordinates   2044271..2044981 (+) Length   236 a.a.
NCBI ID   WP_048790853.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2039271..2049981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS09405 (V6U70_09400) treC 2040487..2042112 (-) 1626 WP_410532393.1 alpha,alpha-phosphotrehalase -
  V6U70_RS09410 - 2042167..2042622 (-) 456 Protein_1797 PTS glucose transporter subunit IIA -
  V6U70_RS09415 (V6U70_09405) treP 2042672..2044114 (-) 1443 WP_410532394.1 PTS system trehalose-specific EIIBC component -
  V6U70_RS09420 (V6U70_09410) treR 2044271..2044981 (+) 711 WP_048790853.1 trehalose operon repressor Regulator
  V6U70_RS09425 (V6U70_09415) - 2045035..2045595 (-) 561 WP_048790852.1 TIGR01440 family protein -
  V6U70_RS09430 (V6U70_09420) - 2045611..2045949 (-) 339 WP_080978435.1 hypothetical protein -
  V6U70_RS09435 (V6U70_09425) - 2045982..2046338 (-) 357 WP_021144704.1 hypothetical protein -
  V6U70_RS09440 (V6U70_09430) - 2046741..2047622 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  V6U70_RS09450 (V6U70_09440) - 2048045..2049340 (-) 1296 WP_021144708.1 hypothetical protein -
  V6U70_RS09455 (V6U70_09445) rplQ 2049589..2049975 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27311.98 Da        Isoelectric Point: 7.1166

>NTDB_id=940877 V6U70_RS09420 WP_048790853.1 2044271..2044981(+) (treR) [Streptococcus salivarius strain KSS12]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQIWRVVRQRVVGSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=940877 V6U70_RS09420 WP_048790853.1 2044271..2044981(+) (treR) [Streptococcus salivarius strain KSS12]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCTATCCATGAGCAAAAGTATCAAGTGGGAGACTTCCTCCC
CACTGAGCAAGAACTGGTTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAGGCGTTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAAATTCATGGCTCTGGTTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTATCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGATCTGGCGTGTTGTTCGTCAAAGAGTCGTTGGTAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGACGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAACTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAACGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAGGACCAGCACGTCGTCTGTGTCCGTTCAAAAGTTTATTTAAACAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60

99.576

0.597