Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABUS34_RS18770 Genome accession   NZ_CP169801
Coordinates   3885275..3886540 (-) Length   421 a.a.
NCBI ID   WP_001285406.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv782     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3880275..3891540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS34_RS18740 pncA 3880500..3881144 (-) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -
  ABUS34_RS18745 dapA 3881474..3882367 (+) 894 WP_031961543.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ABUS34_RS18750 - 3882383..3882985 (+) 603 WP_001177091.1 hypothetical protein -
  ABUS34_RS18755 purC 3883023..3883742 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ABUS34_RS18760 - 3883932..3884123 (+) 192 WP_031961545.1 hypothetical protein -
  ABUS34_RS18765 - 3884420..3885259 (+) 840 WP_031961547.1 formate/nitrite transporter family protein -
  ABUS34_RS18770 rarA 3885275..3886540 (-) 1266 WP_001285406.1 replication-associated recombination protein A Machinery gene
  ABUS34_RS18775 - 3886661..3886975 (-) 315 WP_024433002.1 hypothetical protein -
  ABUS34_RS18780 - 3887154..3888233 (-) 1080 WP_050441232.1 fimbrial protein -
  ABUS34_RS18785 - 3888243..3888548 (-) 306 WP_261493313.1 FimD/PapC C-terminal domain-containing protein -
  ABUS34_RS18790 - 3888525..3890816 (-) 2292 Protein_3669 fimbria/pilus outer membrane usher protein -
  ABUS34_RS18795 - 3890813..3891511 (-) 699 WP_031947073.1 molecular chaperone -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46945.60 Da        Isoelectric Point: 5.8354

>NTDB_id=940876 ABUS34_RS18770 WP_001285406.1 3885275..3886540(-) (rarA) [Acinetobacter baumannii strain Hv782]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=940876 ABUS34_RS18770 WP_001285406.1 3885275..3886540(-) (rarA) [Acinetobacter baumannii strain Hv782]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCGCGCTGTCAGGTCTATACCTTAAACAGTCTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAATGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGATATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGATTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375