Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ABUS26_RS01725 Genome accession   NZ_CP169795
Coordinates   365561..366058 (+) Length   165 a.a.
NCBI ID   WP_031961388.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv780     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360561..371058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS26_RS01690 - 360572..362677 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABUS26_RS01695 - 362717..362847 (-) 131 Protein_325 hypothetical protein -
  ABUS26_RS01700 rpoZ 362886..363164 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS26_RS01705 gmk 363237..363866 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS26_RS01710 ispH 363989..364939 (+) 951 WP_031961390.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS26_RS01715 - 364952..365200 (-) 249 Protein_329 hypothetical protein -
  ABUS26_RS01720 - 365106..365546 (+) 441 WP_031961389.1 Tfp pilus assembly protein FimT/FimU -
  ABUS26_RS01725 pilV 365561..366058 (+) 498 WP_031961388.1 type IV pilus modification protein PilV Machinery gene
  ABUS26_RS01730 - 366051..366968 (+) 918 WP_031961387.1 PilW family protein -
  ABUS26_RS01735 - 366965..367654 (+) 690 WP_079281925.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17555.04 Da        Isoelectric Point: 4.8148

>NTDB_id=940672 ABUS26_RS01725 WP_031961388.1 365561..366058(+) (pilV) [Acinetobacter baumannii strain Hv780]
MIMSQKGAGLMEVLVALLLLSIAVLGFVALQIRAVAASTEAGQNIQATNIARDLAERIRVNRAGLSNYAEIGASDVLPTC
STGECDADQMAKYDYAQVKQRATDLGMSLAILNCKGFSSQRTRQCIYVAWGGTTATDGNGSPNCTNGTAYVPDAKCIIME
VYNYD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=940672 ABUS26_RS01725 WP_031961388.1 365561..366058(+) (pilV) [Acinetobacter baumannii strain Hv780]
ATGATAATGTCTCAAAAAGGTGCTGGTTTAATGGAAGTTCTTGTTGCACTACTTTTATTGAGTATTGCTGTACTTGGTTT
TGTTGCTTTACAAATACGAGCAGTTGCTGCAAGTACTGAAGCAGGTCAGAACATTCAAGCAACCAATATTGCCCGAGATT
TAGCAGAGCGTATACGTGTAAACCGAGCTGGTTTGAGTAACTATGCTGAAATTGGTGCAAGTGACGTACTGCCAACTTGT
TCTACAGGGGAGTGTGATGCTGATCAGATGGCAAAATACGATTATGCCCAAGTCAAACAACGTGCTACAGATTTAGGTAT
GAGTCTTGCAATATTGAATTGTAAAGGTTTTTCATCACAACGAACTCGTCAATGTATATATGTAGCATGGGGTGGTACAA
CAGCTACAGATGGTAATGGTAGTCCGAATTGTACTAATGGTACCGCCTATGTACCTGACGCAAAATGTATCATTATGGAG
GTTTATAACTATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

39.548

100

0.424
  pilV Acinetobacter baylyi ADP1

36.932

100

0.394