Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6U64_RS01420 Genome accession   NZ_CP145862
Coordinates   258940..259458 (+) Length   172 a.a.
NCBI ID   WP_048790101.1    Uniprot ID   A0A3E4XK45
Organism   Streptococcus salivarius strain KSS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 253940..264458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS01395 (V6U64_01395) - 254185..254586 (+) 402 WP_004183523.1 DUF6608 family protein -
  V6U64_RS01400 (V6U64_01400) - 254607..254867 (+) 261 WP_002884687.1 hypothetical protein -
  V6U64_RS01405 (V6U64_01405) mutY 255162..256313 (-) 1152 WP_410536763.1 A/G-specific adenine glycosylase -
  V6U64_RS01410 (V6U64_01410) - 257481..258434 (-) 954 WP_410536765.1 hypothetical protein -
  V6U64_RS01415 (V6U64_01415) rpsF 258638..258928 (+) 291 WP_038676771.1 30S ribosomal protein S6 -
  V6U64_RS01420 (V6U64_01420) ssb 258940..259458 (+) 519 WP_048790101.1 single-stranded DNA-binding protein Machinery gene
  V6U64_RS01425 (V6U64_01425) rpsR 259500..259739 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  V6U64_RS01430 (V6U64_01430) - 259863..260744 (-) 882 WP_104021365.1 DUF4300 family protein -
  V6U64_RS01435 (V6U64_01435) - 260860..261531 (-) 672 WP_013991182.1 DUF1129 domain-containing protein -
  V6U64_RS01440 (V6U64_01440) - 261601..262545 (-) 945 WP_037611177.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18567.29 Da        Isoelectric Point: 4.9163

>NTDB_id=940427 V6U64_RS01420 WP_048790101.1 258940..259458(+) (ssb) [Streptococcus salivarius strain KSS4]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSSSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=940427 V6U64_RS01420 WP_048790101.1 258940..259458(+) (ssb) [Streptococcus salivarius strain KSS4]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAGTTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E4XK45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.062

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.763

100

0.581