Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ABUS03_RS17810 Genome accession   NZ_CP169782
Coordinates   3652312..3652809 (-) Length   165 a.a.
NCBI ID   WP_031961388.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv640     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3647312..3657809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS03_RS17800 - 3650709..3651405 (-) 697 Protein_3475 pilus assembly protein PilX -
  ABUS03_RS17805 - 3651402..3652319 (-) 918 WP_031961387.1 PilW family protein -
  ABUS03_RS17810 pilV 3652312..3652809 (-) 498 WP_031961388.1 type IV pilus modification protein PilV Machinery gene
  ABUS03_RS17815 - 3652824..3653264 (-) 441 WP_031961389.1 Tfp pilus assembly protein FimT/FimU -
  ABUS03_RS17820 - 3653170..3653418 (+) 249 Protein_3479 hypothetical protein -
  ABUS03_RS17825 ispH 3653431..3654381 (-) 951 WP_031961390.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS03_RS17830 gmk 3654504..3655133 (+) 630 WP_000015937.1 guanylate kinase -
  ABUS03_RS17835 rpoZ 3655206..3655484 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS03_RS17840 - 3655523..3655653 (+) 131 Protein_3483 hypothetical protein -
  ABUS03_RS17845 - 3655693..3657798 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17555.04 Da        Isoelectric Point: 4.8148

>NTDB_id=940427 ABUS03_RS17810 WP_031961388.1 3652312..3652809(-) (pilV) [Acinetobacter baumannii strain Hv640]
MIMSQKGAGLMEVLVALLLLSIAVLGFVALQIRAVAASTEAGQNIQATNIARDLAERIRVNRAGLSNYAEIGASDVLPTC
STGECDADQMAKYDYAQVKQRATDLGMSLAILNCKGFSSQRTRQCIYVAWGGTTATDGNGSPNCTNGTAYVPDAKCIIME
VYNYD

Nucleotide


Download         Length: 498 bp        

>NTDB_id=940427 ABUS03_RS17810 WP_031961388.1 3652312..3652809(-) (pilV) [Acinetobacter baumannii strain Hv640]
ATGATAATGTCTCAAAAAGGTGCTGGTTTAATGGAAGTTCTTGTTGCACTACTTTTATTGAGTATTGCTGTACTTGGTTT
TGTTGCTTTACAAATACGAGCAGTTGCTGCAAGTACTGAAGCAGGTCAGAACATTCAAGCAACCAATATTGCCCGAGATT
TAGCAGAGCGTATACGTGTAAACCGAGCTGGTTTGAGTAACTATGCTGAAATTGGTGCAAGTGACGTACTGCCAACTTGT
TCTACAGGGGAGTGTGATGCTGATCAGATGGCAAAATACGATTATGCCCAAGTCAAACAACGTGCTACAGATTTAGGTAT
GAGTCTTGCAATATTGAATTGTAAAGGTTTTTCATCACAACGAACTCGTCAATGTATATATGTAGCATGGGGTGGTACAA
CAGCTACAGATGGTAATGGTAGTCCGAATTGTACTAATGGTACCGCCTATGTACCTGACGCAAAATGTATCATTATGGAG
GTTTATAACTATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

39.548

100

0.424
  pilV Acinetobacter baylyi ADP1

36.932

100

0.394