Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U62_RS07980 Genome accession   NZ_CP145860
Coordinates   1749774..1751588 (-) Length   604 a.a.
NCBI ID   WP_195187786.1    Uniprot ID   A0AB35IPE9
Organism   Streptococcus salivarius strain KSS2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744774..1756588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS07960 (V6U62_07940) - 1745825..1746502 (-) 678 WP_195187782.1 response regulator transcription factor -
  V6U62_RS07965 (V6U62_07945) - 1746504..1747127 (-) 624 WP_195187783.1 GTP pyrophosphokinase family protein -
  V6U62_RS07970 (V6U62_07950) - 1747275..1747898 (-) 624 WP_195187784.1 GNAT family N-acetyltransferase -
  V6U62_RS07975 (V6U62_07955) rcrQ 1748006..1749784 (-) 1779 WP_195187785.1 ABC transporter ATP-binding protein Regulator
  V6U62_RS07980 (V6U62_07960) rcrP 1749774..1751588 (-) 1815 WP_195187786.1 ABC transporter ATP-binding protein Regulator
  V6U62_RS07985 (V6U62_07965) rcrR 1751592..1752035 (-) 444 WP_195187787.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U62_RS07990 (V6U62_07970) - 1752220..1752630 (-) 411 WP_014633541.1 peptide deformylase -
  V6U62_RS07995 (V6U62_07975) - 1752788..1754035 (-) 1248 WP_227071873.1 YfhO family protein -
  V6U62_RS08000 (V6U62_07980) gdhA 1754634..1755986 (-) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67070.72 Da        Isoelectric Point: 6.1431

>NTDB_id=940328 V6U62_RS07980 WP_195187786.1 1749774..1751588(-) (rcrP) [Streptococcus salivarius strain KSS2]
MFKIFKRLTTKELIMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEEKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMENKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPKEVGTVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKNWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQEMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=940328 V6U62_RS07980 WP_195187786.1 1749774..1751588(-) (rcrP) [Streptococcus salivarius strain KSS2]
ATGTTTAAAATTTTTAAACGTTTGACGACAAAAGAGTTAATCATGATTGTCTTAGCGGTGATTTTTGTTTGCTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGATATTACGACACTCTTATCAACTAAGGGAACTAAGGCGTCGGATA
TTTTTGCCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGCTTTATGGCTTCTGTAGTGGTT
GGTTTCTTAGCTGCCAGAACAGCGGCAAGTTTTACCACTCGTCTTCGTGATGATATCTTCCATCAGGTTCTAGATTTTTC
GGATGCAGAGATTAAGAAATTCTCAATTCCTAGTCTTTTGACCCGTACGACAAATGATATTACCCAATTGCAGATGGTAC
TTACCATGGGGTTACAGGTTATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGG
AACTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCATTCTCATGCTCTTCCTCTTGATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACTGGAATTCGTGTGGTGCGTG
CCTATAACGCCGAAAGTTACCAAGAGGAGAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAACCTCTTTATCGGT
CGTTCTTTTGCCTTACTGACACCGGTGATGACTGCTGTATCAAGTGGTTTGACACTGGCTATTTATTGGATTGGTGCGCA
TTTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCCATGGAAAATAAGGTCCATCTCTTCTCAG
ACATGGTGGTTTATTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTTGTTTTCTTCCTTCTTCCA
CGTGCAGTTGTAGCAGCTGGTCGTATCAATGAAGTTCTAGATACGCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAACCTAAAGAAGTGGGTACTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGTGACACGGTTGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGAACGATCAAGGTTGACGGTGTCGATGTGCGACATTATGACCATGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAGAAGGCAGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGCAATAACAGTCCTCTTGATGATGCTAAGAATTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAAGTTGCCCAAGCTGGGTCTAACTTCTCAGGTGGACAGAAGCAACGTTTGGCTATTGC
GCGTGCCTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCCTTCTCAGCCTTGGACTATAAGACCGATCGTAAGT
TACGTCAAGAACTGGCTGAAAAAACACAAGAGATGACCAAGTTGATTGTTGCTCAACGTATCTCTACTATTATGGATGCG
GATCAAATCTTGGTACTTGACCAAGGTAAGGTCGTTGGTCAAGGAACTCACAAGGAACTCTTGGCAAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.264

100

0.684