Detailed information
Bioinformatically predicted
Overview
| Name | amiF | Type | Regulator |
| Locus tag | V6T01_RS07280 | Genome accession | NZ_CP145856 |
| Coordinates | 1596448..1597377 (-) | Length | 309 a.a. |
| NCBI ID | WP_021143812.1 | Uniprot ID | A0AAX2V221 |
| Organism | Streptococcus salivarius strain KSS1 | ||
| Function | internalize XIP (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1585764..1662495 | 1596448..1597377 | within | 0 |
Gene organization within MGE regions
Location: 1585764..1662495
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6T01_RS07230 (V6T01_07205) | fmt | 1586631..1587566 (-) | 936 | WP_410541402.1 | methionyl-tRNA formyltransferase | - |
| V6T01_RS07235 (V6T01_07210) | - | 1587584..1589980 (-) | 2397 | WP_410541401.1 | primosomal protein N' | - |
| V6T01_RS07240 (V6T01_07215) | rpoZ | 1590123..1590437 (-) | 315 | WP_002886855.1 | DNA-directed RNA polymerase subunit omega | - |
| V6T01_RS07245 (V6T01_07220) | gmk | 1590459..1591088 (-) | 630 | WP_002884259.1 | guanylate kinase | - |
| V6T01_RS07250 (V6T01_07225) | ftsY | 1591324..1592721 (-) | 1398 | WP_021143818.1 | signal recognition particle-docking protein FtsY | - |
| V6T01_RS07255 (V6T01_07230) | - | 1592732..1593550 (-) | 819 | WP_014634817.1 | Cof-type HAD-IIB family hydrolase | - |
| V6T01_RS07260 (V6T01_07235) | - | 1593543..1594337 (-) | 795 | WP_021143816.1 | HAD-IIB family hydrolase | - |
| V6T01_RS07265 (V6T01_07240) | - | 1594519..1594896 (+) | 378 | WP_021143815.1 | GntR family transcriptional regulator | - |
| V6T01_RS07270 (V6T01_07245) | - | 1594901..1595599 (+) | 699 | WP_410541400.1 | ABC transporter ATP-binding protein | - |
| V6T01_RS07275 (V6T01_07250) | - | 1595611..1596396 (+) | 786 | WP_021143813.1 | hypothetical protein | - |
| V6T01_RS07280 (V6T01_07255) | amiF | 1596448..1597377 (-) | 930 | WP_021143812.1 | ATP-binding cassette domain-containing protein | Regulator |
| V6T01_RS07285 (V6T01_07260) | amiE | 1597370..1598455 (-) | 1086 | WP_021143811.1 | ABC transporter ATP-binding protein | Regulator |
| V6T01_RS07290 (V6T01_07265) | amiD | 1598465..1599391 (-) | 927 | WP_002884564.1 | oligopeptide ABC transporter permease OppC | Regulator |
| V6T01_RS07295 (V6T01_07270) | amiC | 1599391..1600884 (-) | 1494 | WP_048673698.1 | ABC transporter permease | Regulator |
| V6T01_RS07300 (V6T01_07275) | amiA | 1600945..1602915 (-) | 1971 | WP_148512819.1 | peptide ABC transporter substrate-binding protein | Regulator |
| V6T01_RS07305 (V6T01_07280) | amiA | 1603097..1605067 (-) | 1971 | WP_002884208.1 | peptide ABC transporter substrate-binding protein | Regulator |
| V6T01_RS07310 (V6T01_07285) | pta | 1605303..1606286 (-) | 984 | WP_155198472.1 | phosphate acetyltransferase | - |
| V6T01_RS07315 (V6T01_07290) | - | 1606302..1607198 (-) | 897 | WP_410541399.1 | RluA family pseudouridine synthase | - |
| V6T01_RS07320 (V6T01_07295) | - | 1607195..1608031 (-) | 837 | WP_002884507.1 | NAD kinase | - |
| V6T01_RS07325 (V6T01_07300) | - | 1608003..1608677 (-) | 675 | WP_014634828.1 | GTP pyrophosphokinase family protein | - |
| V6T01_RS07330 (V6T01_07305) | - | 1608773..1609348 (+) | 576 | WP_022496737.1 | CYTH domain-containing protein | - |
| V6T01_RS07335 (V6T01_07310) | - | 1609624..1610595 (+) | 972 | WP_002884482.1 | ribose-phosphate diphosphokinase | - |
| V6T01_RS07340 (V6T01_07315) | - | 1610599..1611711 (+) | 1113 | WP_410541398.1 | cysteine desulfurase family protein | - |
| V6T01_RS07345 (V6T01_07320) | - | 1611713..1612060 (+) | 348 | WP_002884733.1 | DUF1831 domain-containing protein | - |
| V6T01_RS07350 (V6T01_07325) | - | 1612203..1612862 (+) | 660 | WP_002884205.1 | redox-sensing transcriptional repressor Rex | - |
| V6T01_RS07355 (V6T01_07330) | - | 1612855..1613550 (+) | 696 | WP_410541397.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| V6T01_RS07360 (V6T01_07335) | radC | 1613608..1614294 (-) | 687 | WP_226972972.1 | RadC family protein | - |
| V6T01_RS07365 (V6T01_07340) | - | 1614340..1615983 (-) | 1644 | WP_410541396.1 | rhamnan synthesis F family protein | - |
| V6T01_RS07370 (V6T01_07345) | - | 1615984..1617186 (-) | 1203 | WP_410541395.1 | polysaccharide ABC transporter ATP-binding protein | - |
| V6T01_RS07375 (V6T01_07350) | - | 1617186..1617992 (-) | 807 | WP_002886828.1 | ABC transporter permease | - |
| V6T01_RS07380 (V6T01_07355) | - | 1617993..1618931 (-) | 939 | WP_151404464.1 | glycosyltransferase family 2 protein | - |
| V6T01_RS07385 (V6T01_07360) | cps2T | 1618928..1620076 (-) | 1149 | WP_175061432.1 | beta 1-4 rhamnosyltransferase Cps2T | - |
| V6T01_RS07395 (V6T01_07370) | - | 1621682..1622929 (-) | 1248 | WP_410541394.1 | glycosyltransferase family 4 protein | - |
| V6T01_RS07400 (V6T01_07375) | - | 1622933..1624240 (-) | 1308 | WP_410541393.1 | DUF2142 domain-containing protein | - |
| V6T01_RS07405 (V6T01_07380) | - | 1624227..1627178 (-) | 2952 | WP_410541392.1 | rhamnan synthesis F family protein | - |
| V6T01_RS07410 (V6T01_07385) | - | 1627359..1628579 (-) | 1221 | WP_410541668.1 | beta-carotene 15,15'-monooxygenase | - |
| V6T01_RS07415 (V6T01_07390) | - | 1628609..1629391 (-) | 783 | WP_195520029.1 | glycosyltransferase family A protein | - |
| V6T01_RS07420 (V6T01_07395) | - | 1629388..1629723 (-) | 336 | WP_195520030.1 | DUF2304 domain-containing protein | - |
| V6T01_RS07425 (V6T01_07400) | - | 1629729..1630424 (-) | 696 | WP_171968083.1 | glycosyltransferase family 2 protein | - |
| V6T01_RS07430 (V6T01_07405) | - | 1630544..1630982 (-) | 439 | Protein_1423 | glycosyltransferase family 2 protein | - |
| V6T01_RS07435 (V6T01_07410) | - | 1631012..1632004 (-) | 993 | WP_342988710.1 | glycosyltransferase family 8 protein | - |
| V6T01_RS07440 (V6T01_07415) | - | 1632004..1633329 (-) | 1326 | WP_342988712.1 | lipopolysaccharide biosynthesis protein | - |
| V6T01_RS07445 (V6T01_07420) | - | 1633484..1635127 (-) | 1644 | WP_342988713.1 | hypothetical protein | - |
| V6T01_RS07450 (V6T01_07425) | rfbD | 1635127..1635978 (-) | 852 | WP_410541390.1 | dTDP-4-dehydrorhamnose reductase | - |
| V6T01_RS07455 (V6T01_07430) | - | 1636040..1636966 (-) | 927 | WP_118058098.1 | glycosyltransferase family 2 protein | - |
| V6T01_RS07460 (V6T01_07435) | - | 1636977..1637312 (-) | 336 | WP_070438004.1 | metal-sulfur cluster assembly factor | - |
| V6T01_RS07465 (V6T01_07440) | rpoD | 1637366..1638475 (-) | 1110 | WP_002884252.1 | RNA polymerase sigma factor RpoD | - |
| V6T01_RS07470 (V6T01_07445) | dnaG | 1638479..1640290 (-) | 1812 | WP_410541389.1 | DNA primase | - |
| V6T01_RS07475 (V6T01_07450) | mscL | 1640453..1640833 (+) | 381 | WP_002884705.1 | large conductance mechanosensitive channel protein MscL | - |
| V6T01_RS07480 (V6T01_07455) | rpsU | 1640993..1641169 (-) | 177 | WP_002884573.1 | 30S ribosomal protein S21 | - |
| V6T01_RS07485 (V6T01_07460) | - | 1641364..1642158 (-) | 795 | WP_410541388.1 | transporter substrate-binding domain-containing protein | - |
| V6T01_RS07490 (V6T01_07465) | - | 1642220..1643329 (-) | 1110 | WP_410541387.1 | aminotransferase | - |
| V6T01_RS07495 (V6T01_07470) | - | 1643574..1644371 (-) | 798 | WP_201061298.1 | transporter substrate-binding domain-containing protein | - |
| V6T01_RS07500 (V6T01_07475) | - | 1644383..1645195 (-) | 813 | WP_201061300.1 | transporter substrate-binding domain-containing protein | - |
| V6T01_RS07505 (V6T01_07480) | - | 1645411..1645875 (-) | 465 | WP_049546232.1 | 8-oxo-dGTP diphosphatase | - |
| V6T01_RS07510 (V6T01_07485) | uvrB | 1645920..1647911 (-) | 1992 | WP_041826694.1 | excinuclease ABC subunit UvrB | - |
| V6T01_RS07515 (V6T01_07490) | - | 1647901..1648521 (-) | 621 | WP_410541386.1 | hypothetical protein | - |
| V6T01_RS07520 (V6T01_07495) | - | 1648592..1649527 (-) | 936 | WP_410541385.1 | CPBP family intramembrane glutamic endopeptidase | - |
| V6T01_RS07525 (V6T01_07500) | - | 1649727..1651925 (+) | 2199 | WP_048673755.1 | ABC transporter substrate-binding protein/permease | - |
| V6T01_RS07530 (V6T01_07505) | - | 1651925..1652665 (+) | 741 | WP_060971807.1 | amino acid ABC transporter ATP-binding protein | - |
| V6T01_RS07535 (V6T01_07510) | - | 1652742..1652939 (-) | 198 | WP_410541384.1 | GTPase | - |
| V6T01_RS07540 (V6T01_07515) | obgE | 1653563..1654876 (-) | 1314 | WP_410541383.1 | GTPase ObgE | - |
| V6T01_RS07545 (V6T01_07520) | - | 1654971..1655099 (-) | 129 | WP_002884629.1 | DUF4044 domain-containing protein | - |
| V6T01_RS07550 (V6T01_07525) | - | 1655180..1655911 (-) | 732 | WP_037602892.1 | pseudouridine synthase | - |
| V6T01_RS07555 (V6T01_07530) | - | 1655912..1656886 (-) | 975 | WP_038676569.1 | GyrI-like domain-containing protein | - |
| V6T01_RS07560 (V6T01_07535) | - | 1656900..1657283 (-) | 384 | WP_021143776.1 | PaaI family thioesterase | - |
| V6T01_RS07565 (V6T01_07540) | - | 1657377..1657742 (-) | 366 | WP_002884719.1 | OsmC family protein | - |
| V6T01_RS07570 (V6T01_07545) | - | 1657989..1658354 (+) | 366 | WP_037602887.1 | hypothetical protein | - |
| V6T01_RS07575 (V6T01_07550) | - | 1658484..1659374 (+) | 891 | WP_410541382.1 | DMT family transporter | - |
| V6T01_RS07580 (V6T01_07555) | - | 1659412..1659651 (-) | 240 | WP_037602882.1 | hypothetical protein | - |
| V6T01_RS07585 (V6T01_07560) | serB | 1659875..1660522 (-) | 648 | WP_037602880.1 | phosphoserine phosphatase SerB | - |
| V6T01_RS07590 (V6T01_07565) | ezrA | 1660634..1662358 (-) | 1725 | WP_410541381.1 | septation ring formation regulator EzrA | - |
Sequence
Protein
Download Length: 309 a.a. Molecular weight: 35005.11 Da Isoelectric Point: 6.8971
>NTDB_id=940189 V6T01_RS07280 WP_021143812.1 1596448..1597377(-) (amiF) [Streptococcus salivarius strain KSS1]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK
Nucleotide
Download Length: 930 bp
>NTDB_id=940189 V6T01_RS07280 WP_021143812.1 1596448..1597377(-) (amiF) [Streptococcus salivarius strain KSS1]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCTGATTTGGTTATCGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATTGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTCGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCTGATTTGGTTATCGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATTGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTCGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| amiF | Streptococcus salivarius strain HSISS4 |
100 |
100 |
1 |
| amiF | Streptococcus thermophilus LMG 18311 |
98.058 |
100 |
0.981 |
| amiF | Streptococcus thermophilus LMD-9 |
97.735 |
100 |
0.977 |