Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V6T01_RS07280 Genome accession   NZ_CP145856
Coordinates   1596448..1597377 (-) Length   309 a.a.
NCBI ID   WP_021143812.1    Uniprot ID   A0AAX2V221
Organism   Streptococcus salivarius strain KSS1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591448..1602377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS07255 (V6T01_07230) - 1592732..1593550 (-) 819 WP_014634817.1 Cof-type HAD-IIB family hydrolase -
  V6T01_RS07260 (V6T01_07235) - 1593543..1594337 (-) 795 WP_021143816.1 HAD-IIB family hydrolase -
  V6T01_RS07265 (V6T01_07240) - 1594519..1594896 (+) 378 WP_021143815.1 GntR family transcriptional regulator -
  V6T01_RS07270 (V6T01_07245) - 1594901..1595599 (+) 699 WP_410541400.1 ABC transporter ATP-binding protein -
  V6T01_RS07275 (V6T01_07250) - 1595611..1596396 (+) 786 WP_021143813.1 hypothetical protein -
  V6T01_RS07280 (V6T01_07255) amiF 1596448..1597377 (-) 930 WP_021143812.1 ATP-binding cassette domain-containing protein Regulator
  V6T01_RS07285 (V6T01_07260) amiE 1597370..1598455 (-) 1086 WP_021143811.1 ABC transporter ATP-binding protein Regulator
  V6T01_RS07290 (V6T01_07265) amiD 1598465..1599391 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  V6T01_RS07295 (V6T01_07270) amiC 1599391..1600884 (-) 1494 WP_048673698.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35005.11 Da        Isoelectric Point: 6.8971

>NTDB_id=940189 V6T01_RS07280 WP_021143812.1 1596448..1597377(-) (amiF) [Streptococcus salivarius strain KSS1]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKKIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=940189 V6T01_RS07280 WP_021143812.1 1596448..1597377(-) (amiF) [Streptococcus salivarius strain KSS1]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTGTCTCACTCT
GAGAAAAACGACCTTATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTCGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGAAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCACGTTCCTTGGTCATGCAACCTGATTTGGTTATCGCTGACGAACCCATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAACTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATTGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTCGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

100

100

1
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977