Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6Z34_RS08265 Genome accession   NZ_CP145817
Coordinates   1660521..1661300 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain WH-7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1655521..1666300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS08245 trmFO 1656208..1657515 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6Z34_RS08250 xerC 1657585..1658502 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  V6Z34_RS08255 hslV 1658518..1659063 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  V6Z34_RS08260 hslU 1659080..1660483 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  V6Z34_RS08265 codY 1660521..1661300 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6Z34_RS08270 flgB 1661654..1662043 (+) 390 WP_063174820.1 flagellar basal body rod protein FlgB -
  V6Z34_RS08275 flgC 1662043..1662495 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  V6Z34_RS08280 fliE 1662506..1662826 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  V6Z34_RS08285 fliF 1662869..1664479 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  V6Z34_RS08290 fliG 1664492..1665508 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  V6Z34_RS08295 fliH 1665501..1666256 (+) 756 WP_003154255.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=940094 V6Z34_RS08265 WP_003154263.1 1660521..1661300(+) (codY) [Bacillus velezensis strain WH-7]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=940094 V6Z34_RS08265 WP_003154263.1 1660521..1661300(+) (codY) [Bacillus velezensis strain WH-7]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCAGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471