Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8616_RS02140 Genome accession   NZ_AP028382
Coordinates   433564..434079 (+) Length   171 a.a.
NCBI ID   WP_002793754.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-11051     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428564..439079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8616_RS02115 (B11051_04120) - 429020..429358 (+) 339 WP_002806264.1 hypothetical protein -
  R8616_RS02120 (B11051_04130) - 429367..430092 (+) 726 WP_002822456.1 phosphatidate cytidylyltransferase -
  R8616_RS02125 (B11051_04140) dxr 430089..431165 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8616_RS02130 (B11051_04150) - 431162..432556 (+) 1395 WP_002793756.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8616_RS02135 (B11051_04160) tsaD 432553..433560 (+) 1008 WP_002780547.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8616_RS02140 (B11051_04170) ctsG 433564..434079 (+) 516 WP_002793754.1 type II secretion system protein Machinery gene
  R8616_RS02145 (B11051_04180) - 434079..435320 (+) 1242 WP_002780551.1 DUF2920 family protein -
  R8616_RS02150 (B11051_04190) - 435332..437161 (+) 1830 WP_096788362.1 motility associated factor glycosyltransferase family protein -
  R8616_RS02155 (B11051_04200) - 437158..438986 (+) 1829 Protein_418 6-hydroxymethylpterin diphosphokinase MptE-like protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18736.59 Da        Isoelectric Point: 7.1358

>NTDB_id=93996 R8616_RS02140 WP_002793754.1 433564..434079(+) (ctsG) [Campylobacter coli strain BCH-11051]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=93996 R8616_RS02140 WP_002793754.1 433564..434079(+) (ctsG) [Campylobacter coli strain BCH-11051]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.228

100

0.912

Multiple sequence alignment