Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V6D45_RS13585 Genome accession   NZ_CP145722
Coordinates   2663963..2666359 (-) Length   798 a.a.
NCBI ID   WP_338442907.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2658963..2671359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS13565 (V6D45_13570) - 2661867..2662928 (-) 1062 WP_072566614.1 AI-2E family transporter -
  V6D45_RS13570 (V6D45_13575) - 2663026..2663157 (-) 132 WP_003225895.1 YrzQ family protein -
  V6D45_RS13575 (V6D45_13580) - 2663179..2663370 (-) 192 WP_003225893.1 hypothetical protein -
  V6D45_RS13580 (V6D45_13585) - 2663382..2663906 (-) 525 WP_338442906.1 PRC-barrel domain-containing protein -
  V6D45_RS13585 (V6D45_13590) recD2 2663963..2666359 (-) 2397 WP_338442907.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V6D45_RS13590 (V6D45_13595) - 2666385..2667005 (-) 621 WP_338444526.1 tetratricopeptide repeat protein -
  V6D45_RS13595 (V6D45_13600) mnmA 2667091..2668206 (-) 1116 WP_338442908.1 tRNA 2-thiouridine(34) synthase MnmA -
  V6D45_RS13600 (V6D45_13605) - 2668234..2669376 (-) 1143 WP_338442909.1 cysteine desulfurase family protein -
  V6D45_RS13605 (V6D45_13610) cymR 2669395..2669811 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  V6D45_RS13610 (V6D45_13615) - 2670014..2671279 (+) 1266 WP_061186667.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89188.84 Da        Isoelectric Point: 5.0705

>NTDB_id=939693 V6D45_RS13585 WP_338442907.1 2663963..2666359(-) (recD2) [Bacillus spizizenii strain kcgeb_S11]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVIETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAREGQHITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPVVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASKVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVNFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSLQIEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=939693 V6D45_RS13585 WP_338442907.1 2663963..2666359(-) (recD2) [Bacillus spizizenii strain kcgeb_S11]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAGGGGACAGTCAACACAGTCATCTATCATAA
CGACACCAATTTATATACGGTTCTGAAAGTAAAAGTCATAGAAACCTCCGAAGCGATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATCCCGACGACTAAGGAAGGCATCATTCAGTATTTATCGAGTGATTTGTT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGTGCCATTAATAAAATTTTGGCCGACG
CTTCCGTGCTTTATGATGTTCCGAGACTGTCAAAAAAGAAAGCTGATACGCTAGCCGGCGCTTTGCAGCGGCATCAGGGA
CTTGAGCAAATCATGATTTCTCTGAATCAGTTCGGCTTTGGCCCTCAGCTGTCTATGAAAATCTATCAGGCCTATGAATC
CGAGACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTTGTGAAAGATGTAGAAGGGATTGGGTTTGGGAAAGCGGATG
AGCTTGGCAGCAGAATGGGACTTTCGGGTAATCATCCTGAGCGGGTAAAAGCCGCCATTTTGTACACGCTTGAAACGACT
TGTCTGTCAGAAGGGCATACGTACATAGAAACGGAGCAGCTGATTATCGACACCCAATCACTGTTGAACCAGTCAGCAAG
GGAAGGACAGCACATCACAGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ACGGCCGCTGTTATTTTCCATCGCTGTTTTACGCAGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCAAGCCAAACC
GAATATGATGACCAGTTTCCTGAATCAGAATTTCTGCTCGCTTTAGGAGAACTGGAAGAACGGATGAACGTTCAGTATGC
CCCGAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCACCGATGCTTCTTTTAACGGGAGGCCCGGGAACAGGGAAAA
CGACGGTAATCAGAGGAATTGTCGAACTATACGGAGAGCTTCATGGCGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGGTTGTATTGGCCGCACCGACAGGAAGAGCGGCGAAACGGATGAGTGAATCAACGGGCCTTCCGGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGCGCTGAAGGCTTTACCCATACAGAGGATCAGCCGATCGAAGGAAAGCTGT
TAATTATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCACTTGTTCAAGGCGATCCCTGATCATATTCAAATC
ATCATTGTCGGAGATGAAGATCAACTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCTAAGGTAAT
TCCGACTGTGAGACTGACAGACATCTACCGCCAGGCTGAGGGGTCATCAATCGTTGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCGACGAAGGACCGTTCCTTTATTCGCTGCGGCGGCTCGCAAATAAAAGAAGTA
GTCGAAAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATACAGGTTCTCGCCCCGATGTACAGAGG
GAAAGCAGGCATCAATGAACTGAACGTGATGCTGCAGGACATCTTGAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGAGATGTTGTCTACAGAACGGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTCAATGGAGAT
ATTGGCGAAATCACGTCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGACATGGCCGTTGTTAATTTTGACGGCAA
TGAAATGACATTTACGAAAAAAGATTTTAACCAGTTTACCCATGCGTATTGCTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCTATTACA
AGAGCAAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTAAAAAATAATGACGCAACTGTCAG
ACAGACTTCCTTGAAAAACAGGCTGTCATTACAGATTGAGGAAATGGATGCCGAGCTTGAGGCTTTGCAAAAAGAGCTCC
CGTTCAGTGTGCACGATGCCAATATTGGTATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.745

99.875

0.986