Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6D45_RS08650 Genome accession   NZ_CP145722
Coordinates   1692814..1693593 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687814..1698593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS08630 (V6D45_08635) trmFO 1688507..1689814 (+) 1308 WP_338444342.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6D45_RS08635 (V6D45_08640) xerC 1689882..1690796 (+) 915 WP_014113784.1 tyrosine recombinase XerC -
  V6D45_RS08640 (V6D45_08645) clpQ 1690809..1691354 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  V6D45_RS08645 (V6D45_08650) hslU 1691362..1692774 (+) 1413 WP_268393776.1 HslU--HslV peptidase ATPase subunit -
  V6D45_RS08650 (V6D45_08655) codY 1692814..1693593 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6D45_RS08655 (V6D45_08660) flgB 1693976..1694365 (+) 390 WP_338444343.1 flagellar basal body rod protein FlgB -
  V6D45_RS08660 (V6D45_08665) flgC 1694365..1694817 (+) 453 WP_014113787.1 flagellar basal body rod protein FlgC -
  V6D45_RS08665 (V6D45_08670) fliE 1694829..1695149 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  V6D45_RS08670 (V6D45_08675) fliF 1695195..1696805 (+) 1611 WP_338444344.1 flagellar basal-body MS-ring/collar protein FliF -
  V6D45_RS08675 (V6D45_08680) fliG 1696818..1697834 (+) 1017 WP_003220860.1 flagellar motor switch protein FliG -
  V6D45_RS08680 (V6D45_08685) fliH 1697827..1698579 (+) 753 WP_338444345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=939674 V6D45_RS08650 WP_003220850.1 1692814..1693593(+) (codY) [Bacillus spizizenii strain kcgeb_S11]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=939674 V6D45_RS08650 WP_003220850.1 1692814..1693593(+) (codY) [Bacillus spizizenii strain kcgeb_S11]
ATGGCTTTATTACAAAAAACACGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTTGTTGTAAGCCGCAGAGGCAAGCTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGTATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGATGGAAACGAAGGTCTCCTCGTTGCAAGTAAAATCGCTGACCGCGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAATAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467